miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00859;mir-234;Z81468.1/1975-1876 6239:Caenorhabditis elegans
Length = 100
Score = 190 bits (96), Expect = 2e-48
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 caaaaaatgatcaaacggtattccagagttgataataaaaatgcgtcagtccgcaatcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 caaaaaatgatcaaacggtattccagagttgataataaaaatgcgtcagtccgcaatcta 64
Query: 61 ttattgctcgagaataccctttgactactatgtgta 96
||||||||||||||||||||||||||||||||||||
Sbjct: 65 ttattgctcgagaataccctttgactactatgtgta 100
>RF00859;mir-234;CAAC02000444.1/319384-319479 6238:Caenorhabditis
briggsae
Length = 96
Score = 67.9 bits (34), Expect = 2e-11
Identities = 66/77 (85%), Gaps = 6/77 (7%)
Strand = Plus / Plus
Query: 9 gatcaaacggtattccagagttgataataaaaatgcgtcagtccgcaatctattattgct 68
|||||||||||||||| |||| |||||||||||| ||| || ||||||||||||
Sbjct: 13 gatcaaacggtattcctgagtgaataataaaaatgagtc------cattctattattgct 66
Query: 69 cgagaataccctttgac 85
|||||||||||||||||
Sbjct: 67 cgagaataccctttgac 83
>RF00859;mir-234;AAGD02003360.1/7138-7240 31234:Caenorhabditis
remanei
Length = 103
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 57 tctattattgctcgagaataccctttgac 85
|||||||||||||||||||||||||||||
Sbjct: 62 tctattattgctcgagaataccctttgac 90
>RF00859;mir-234;ABEG01020284.1/1702-1803 135651:Caenorhabditis
brenneri
Length = 102
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 59 tattattgctcgagaataccctttgac 85
||||||||||| |||||||||||||||
Sbjct: 64 tattattgctcaagaataccctttgac 90
