miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00713;mir-239;Z67754.1/1218-1322 6239:Caenorhabditis elegans
Length = 105
Score = 194 bits (98), Expect = 1e-49
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 tacacgtttgcaatttttgtactacacataggtactggacaattttcaaaatatatccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tacacgtttgcaatttttgtactacacataggtactggacaattttcaaaatatatccag 64
Query: 61 tgtctagtctagtgcaaacattgctcggtgttgtttga 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 65 tgtctagtctagtgcaaacattgctcggtgttgtttga 102
>RF00713;mir-239;AAGD02001685.1/9995-9897 31234:Caenorhabditis
remanei
Length = 99
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 8 ttgcaatttttgtactacacataggtactggaca 41
|||| |||||||||||||||||||||||||||||
Sbjct: 10 ttgcgatttttgtactacacataggtactggaca 43
>RF00713;mir-239;ABLE02014824.1/3073-3172 281687:Caenorhabditis
japonica
Length = 100
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 tttgtactacacataggtactgg 38
|||||||||||||||||||||||
Sbjct: 18 tttgtactacacataggtactgg 40
>RF00713;mir-239;Z67754.1/178-79 6239:Caenorhabditis elegans
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 9 tgcaatttttgtactacacataggtactgg 38
|||||||||||||||||||| | |||||||
Sbjct: 11 tgcaatttttgtactacacaaaagtactgg 40
