miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00713;mir-239;Z67754.1/178-79 6239:Caenorhabditis elegans
Length = 100
Score = 194 bits (98), Expect = 1e-49
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 gcgacagatgcaatttttgtactacacaaaagtactggtcatttaagttgaggctcagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gcgacagatgcaatttttgtactacacaaaagtactggtcatttaagttgaggctcagca 62
Query: 61 cttttgtggtgtgcaaaaatggcaagttgcttttatct 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 63 cttttgtggtgtgcaaaaatggcaagttgcttttatct 100
>RF00713;mir-239;CAAC02000438.1/1163532-1163436
6238:Caenorhabditis briggsae
Length = 97
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 8 atgcaatttttgtactacacaaaagtactg 37
|||||||||||||||| |||||||||||||
Sbjct: 12 atgcaatttttgtactgcacaaaagtactg 41
>RF00713;mir-239;ABLE02014824.1/1907-1808 281687:Caenorhabditis
japonica
Length = 100
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 caatttttgtactacacaaaagt 33
|||||||||||||||||||||||
Sbjct: 14 caatttttgtactacacaaaagt 36
>RF00713;mir-239;Z67754.1/1218-1322 6239:Caenorhabditis elegans
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 9 tgcaatttttgtactacacaaaagtactgg 38
|||||||||||||||||||| | |||||||
Sbjct: 13 tgcaatttttgtactacacataggtactgg 42
