miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00816;mir-245;Z75542.1/9021-9117 6239:Caenorhabditis elegans
Length = 97
Score = 192 bits (97), Expect = 6e-49
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 ctgaattcaatgttggagagctatttgcaaggtacctaattgtttgattattgattctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgaattcaatgttggagagctatttgcaaggtacctaattgtttgattattgattctca 60
Query: 61 attggtcccctccaagtagctctattgcattgtttgc 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 attggtcccctccaagtagctctattgcattgtttgc 97
>RF00816;mir-245;CAAC02000478.1/282161-282067 6238:Caenorhabditis
briggsae
Length = 95
Score = 111 bits (56), Expect = 2e-24
Identities = 83/91 (91%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 5 attcaatgttggagagctatttgcaaggtacctaattgtttgattattgattctcaattg 64
||||||||| | |||||| ||||||||||||||||||||||| | | |||||||||||
Sbjct: 5 attcaatgtcgaagagctgcttgcaaggtacctaattgtttgactct--attctcaattg 62
Query: 65 gtcccctccaagtagctctattgcattgttt 95
|||||||||||||||||||||||||||||||
Sbjct: 63 gtcccctccaagtagctctattgcattgttt 93
>RF00816;mir-245;ABEG01015644.1/323-418 135651:Caenorhabditis
brenneri
Length = 96
Score = 105 bits (53), Expect = 1e-22
Identities = 66/69 (95%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 25 ttgcaaggtacctaattgtttgattattgattctcaattggtcccctccaagtagctcta 84
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 25 ttgcaaggtacctaattgtttgaa-attcattctcaattggtcccctccaagtagctcta 83
Query: 85 ttgcattgt 93
|||||||||
Sbjct: 84 ttgcattgt 92
>RF00816;mir-245;ABLE02010834.1/2284-2190 281687:Caenorhabditis
japonica
Length = 95
Score = 91.7 bits (46), Expect = 2e-18
Identities = 73/81 (90%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 11 tgttggagagctatttgcaaggtacctaattgtttgattattgattctcaattggtcccc 70
||||| |||||| |||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 11 tgttgtagagctgtttgcaaggtacctaattgtttga--aatgattctcaattggtcccc 68
Query: 71 tccaagtagctctattgcatt 91
|||||| ||||| || |||||
Sbjct: 69 tccaagcagctccatcgcatt 89
