miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00819;mir-246;Z69385.1/30335-30444 6239:Caenorhabditis elegans
Length = 110
Score = 192 bits (97), Expect = 6e-49
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 atctgaattataaaacatcgcctaaccgttgtcatgtaatatttcccagagaaaatgata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 atctgaattataaaacatcgcctaaccgttgtcatgtaatatttcccagagaaaatgata 65
Query: 61 ttacatgtttcgggtaggagctgttcaaactttggac 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 66 ttacatgtttcgggtaggagctgttcaaactttggac 102
>RF00819;mir-246;AAGD02004290.1/17657-17764 31234:Caenorhabditis
remanei
Length = 108
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 57 gatattacatgtttcgggtaggagctgtt 85
|||||||||||| ||||||||||||||||
Sbjct: 60 gatattacatgtatcgggtaggagctgtt 88
>RF00819;mir-246;ABEG01014994.1/2409-2516 135651:Caenorhabditis
brenneri
Length = 108
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 tattacatgtttcgggtaggagctgt 84
||||||||||| ||||||||||||||
Sbjct: 62 tattacatgttccgggtaggagctgt 87
>RF00819;mir-246;CAAC02000470.1/1130830-1130722
6238:Caenorhabditis briggsae
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 59 tattacatgtttcgggtaggagctgttcaa 88
|||||||||| | |||||||||||||||||
Sbjct: 63 tattacatgtattgggtaggagctgttcaa 92
