miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00820;mir-248;U41270.1/20339-20236 6239:Caenorhabditis elegans
Length = 104
Score = 194 bits (98), Expect = 1e-49
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 tttcccggctgcaactacggtaagcggtatccagccgatgttttcaatactgcatttgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttcccggctgcaactacggtaagcggtatccagccgatgttttcaatactgcatttgaa 60
Query: 61 tacacgtgcacggataacgctcattgtttttcgcatgc 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacacgtgcacggataacgctcattgtttttcgcatgc 98
>RF00820;mir-248;AAGD02008733.1/82049-82151 31234:Caenorhabditis
remanei
Length = 103
Score = 65.9 bits (33), Expect = 9e-11
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 23 agcggtatccagccgatgttttcaatactgcatttgaatacacgtgcacggataacgctc 82
|||| |||||||||| ||| ||||||| |||||||| ||||||||||||||| ||||||
Sbjct: 23 agcgatatccagccgttgtattcaatagcgcatttgagtacacgtgcacggat-acgctc 81
Query: 83 attgttttt 91
|| ||||||
Sbjct: 82 atcgttttt 90
>RF00820;mir-248;ABEG01000830.1/8963-9067 135651:Caenorhabditis
brenneri
Length = 105
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 56 ttgaatacacgtgcacggataacgctcattgt 87
|||| |||||||||||||||||||||||||||
Sbjct: 57 ttgactacacgtgcacggataacgctcattgt 88
>RF00820;mir-248;ABLE02006365.1/153-51 281687:Caenorhabditis
japonica
Length = 103
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 61 tacacgtgcacggataacgctcattgttttt 91
|||||||||||||||| |||||||||||||
Sbjct: 60 tacacgtgcacggatagtgctcattgttttt 90
