miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00836;mir-250;Z72511.1/6583-6503 6239:Caenorhabditis elegans
Length = 81
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 8 tcggaccacgccttcagttgcctcgtgatccgccaaacacaataaatggacgaatcacag 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcggaccacgccttcagttgcctcgtgatccgccaaacacaataaatggacgaatcacag 60
Query: 68 tcaactgttggcatggtgctc 88
|||||||||||||||||||||
Sbjct: 61 tcaactgttggcatggtgctc 81
>RF00836;mir-250;CAAC02000606.1/999512-999434 6238:Caenorhabditis
briggsae
Length = 79
Score = 81.8 bits (41), Expect = 2e-15
Identities = 67/73 (91%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 8 tcggaccacgccttcagttgcctcgtgatccgccaaacacaataaatggacgaatcacag 67
|||||||||||||||||||||||||||||||||| || | | ||||||||||||||||
Sbjct: 1 tcggaccacgccttcagttgcctcgtgatccgccgaa-tctgt-aatggacgaatcacag 58
Query: 68 tcaactgttggca 80
|||||||||||||
Sbjct: 59 tcaactgttggca 71
>RF00836;mir-250;ABLE02007950.1/1152-1229 281687:Caenorhabditis
japonica
Length = 78
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 53 atggacgaatcacagtcaactgttggcatggt 84
||||||||||||||||||||||||||| ||||
Sbjct: 43 atggacgaatcacagtcaactgttggcctggt 74
>RF00836;mir-250;ABEG01010693.1/18993-19071 135651:Caenorhabditis
brenneri
Length = 79
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 atggacgaatcacagtcaactgttggca 80
||||||||||||||||||||||||||||
Sbjct: 44 atggacgaatcacagtcaactgttggca 71
>RF00836;mir-250;AAGD02011065.1/159359-159279 31234:Caenorhabditis
remanei
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 8 tcggaccacgccttcagttgcctcgtgatccgccaaacacaataaatggacgaatcacag 67
||||||| | |||||||||| ||||||||||||| | ||| |||||||||||||||
Sbjct: 1 tcggaccgccccttcagttgactcgtgatccgccgactttgatatatggacgaatcacag 60
Query: 68 tca 70
|||
Sbjct: 61 tca 63
