miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00837;mir-251;Z68005.1/28031-28127 6239:Caenorhabditis elegans
Length = 97
Score = 192 bits (97), Expect = 6e-49
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 actttcaatgaccccttgttaagtagtggtgccgctcttattaggttgaaaagtaataag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actttcaatgaccccttgttaagtagtggtgccgctcttattaggttgaaaagtaataag 60
Query: 61 agtagttcactacttatcaaggtgaaatttgaaattt 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 agtagttcactacttatcaaggtgaaatttgaaattt 97
>RF00837;mir-251;ABEG01020185.1/58793-58890 135651:Caenorhabditis
brenneri
Length = 98
Score = 91.7 bits (46), Expect = 2e-18
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 12 ccccttgttaagtagtggtgccgctcttattaggttgaaaagtaataagagtagttcact 71
||||||||||||||||||||||||||||||||| | | |||||||||||| | |||||
Sbjct: 13 ccccttgttaagtagtggtgccgctcttattagatgagatagtaataagagttgctcact 72
Query: 72 acttatcaaggtga 85
||||||||||||||
Sbjct: 73 acttatcaaggtga 86
>RF00837;mir-251;AAGD02002327.1/50319-50415 31234:Caenorhabditis
remanei
Length = 97
Score = 89.7 bits (45), Expect = 6e-18
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 11 accccttgttaagtagtggtgccgctcttattaggttgaaaagtaataagagtagttcac 70
|||||||||||||||||||||||||||||||||| | | | |||||||||| | ||||
Sbjct: 11 accccttgttaagtagtggtgccgctcttattagaatccagaataataagagtcgctcac 70
Query: 71 tacttatcaaggtgaaatttg 91
| |||||||||||||||||||
Sbjct: 71 tgcttatcaaggtgaaatttg 91
>RF00837;mir-251;ABLE02002774.1/12135-12234 281687:Caenorhabditis
japonica
Length = 100
Score = 60.0 bits (30), Expect = 6e-09
Identities = 69/81 (85%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 14 ccttgttaagtagtggtgccgctcttatt--aggttgaaaagtaataagagtagttcact 71
||||||||||||||||||||| ||||||| | | |||||||||||||| ||||| |
Sbjct: 15 ccttgttaagtagtggtgccgttcttattaaatctcaaaaagtaataagagctgttcatt 74
Query: 72 acttatcaaggtgaaatttga 92
|||||||||||| || |||||
Sbjct: 75 acttatcaaggtaaagtttga 95
>RF00837;mir-251;CAAC02000543.1/114114-114017 6238:Caenorhabditis
briggsae
Length = 98
Score = 56.0 bits (28), Expect = 9e-08
Identities = 53/60 (88%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 18 gttaagtagtggtgccgctcttattag-gttgaaaagtaataagagtagttcactactta 76
||||||||||||||||||||||||||| || ||||||||||||| |||| |||||||
Sbjct: 18 gttaagtagtggtgccgctcttattagaattatcaagtaataagagttgttcgctactta 77
