miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01064;mir-253;AF016421.1/10410-10311 6239:Caenorhabditis elegans
Length = 100
Score = 198 bits (100), Expect = 1e-50
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 3 attgttccgatcgccgctcttttcacacacctcactaacactgaccaccgatgcatagat 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attgttccgatcgccgctcttttcacacacctcactaacactgaccaccgatgcatagat 60
Query: 63 gttagtaggcgttgtgggaagggcggcgacagtgaacgtc 102
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttagtaggcgttgtgggaagggcggcgacagtgaacgtc 100
>RF01064;mir-253;AAGD02012098.1/83849-83750 31234:Caenorhabditis
remanei
Length = 100
Score = 101 bits (51), Expect = 2e-21
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 21 cttttcacacacctcactaacactgaccaccgatgcatagatgttagtaggcgttgtggg 80
|||||||||||||||||||||||| | ||| ||| ||||||||||||||||||||||||
Sbjct: 19 cttttcacacacctcactaacactaaacacagattgatagatgttagtaggcgttgtggg 78
Query: 81 aagggcggcga 91
|||||||||||
Sbjct: 79 aagggcggcga 89
>RF01064;mir-253;CAAC02000488.1/1601400-1601301
6238:Caenorhabditis briggsae
Length = 100
Score = 79.8 bits (40), Expect = 7e-15
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 25 tcacacacctcactaacactgaccaccgatgcatagatgttagtaggcgttgtgggaagg 84
|||||||||||||||||||| || || ||| |||||||||||||||||||||||||||
Sbjct: 23 tcacacacctcactaacactaactacagatttctagatgttagtaggcgttgtgggaagg 82
Query: 85 gcgg 88
||||
Sbjct: 83 gcgg 86
>RF01064;mir-253;ABLE02006994.1/10968-11066 281687:Caenorhabditis
japonica
Length = 99
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 58 tagatgttagtaggcgttgtgggaagggcggcga 91
||||||||||||||||||||||||||||||||||
Sbjct: 55 tagatgttagtaggcgttgtgggaagggcggcga 88
>RF01064;mir-253;ABEG01006290.1/1306-1406 135651:Caenorhabditis
brenneri
Length = 101
Score = 63.9 bits (32), Expect = 4e-10
Identities = 63/72 (87%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 21 cttttcacacacctcactaacactga-ccaccgatgcatagatgttagtaggcgttgtgg 79
|||||||||||||| |||||||| | || | |||| || ||||||||||||||||||||
Sbjct: 19 cttttcacacacctgactaacacaaaaccgcagatgtattgatgttagtaggcgttgtgg 78
Query: 80 gaagggcggcga 91
|||||| |||||
Sbjct: 79 gaagggtggcga 90
