miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00855;mir-254;Z66567.1/13696-13587 6239:Caenorhabditis elegans
Length = 110
Score = 198 bits (100), Expect = 9e-51
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 actatgcatattgccgcctacagaagcatagatttccacaaaccattcgaggtgtttgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 actatgcatattgccgcctacagaagcatagatttccacaaaccattcgaggtgtttgtg 66
Query: 61 caaatctttcgcgactgtaggcggcgaacatgcagttttt 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 caaatctttcgcgactgtaggcggcgaacatgcagttttt 106
>RF00855;mir-254;ABEG01011422.1/1240-1130 135651:Caenorhabditis
brenneri
Length = 111
Score = 83.8 bits (42), Expect = 4e-16
Identities = 82/94 (87%), Gaps = 1/94 (1%)
Strand = Plus / Plus
Query: 4 atgcatattgccgcctacagaagcatagatttccacaaacc-attcgaggtgtttgtgca 62
|||||||||||||||||||||||||||||||| |||| ||| || || | |||||||||
Sbjct: 10 atgcatattgccgcctacagaagcatagattttcacataccgatctgaagagtttgtgca 69
Query: 63 aatctttcgcgactgtaggcggcgaacatgcagt 96
||||| |||| ||||||||||||| |||||||
Sbjct: 70 aatctgtcgcatctgtaggcggcgattatgcagt 103
>RF00855;mir-254;ABLE02000234.1/7374-7485 281687:Caenorhabditis
japonica
Length = 112
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 14 ccgcctacagaagcatagatttccacaa 41
||||||||||||||||||||||||||||
Sbjct: 20 ccgcctacagaagcatagatttccacaa 47
>RF00855;mir-254;AAGD02002330.1/90281-90171 31234:Caenorhabditis
remanei
Length = 111
Score = 50.1 bits (25), Expect = 5e-06
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 4 atgcatattgccgcctacagaagcatagatttccacaaaccattcg-aggtgtttgtgca 62
|||||||| ||||| ||||||||| | ||||| |||| |||| ||| | |||| ||||||
Sbjct: 10 atgcatatcgccgcttacagaagcgtggattttcacataccaatcggaagtgtctgtgca 69
Query: 63 aatctttcgcgactgta 79
||||| |||| ||||||
Sbjct: 70 aatctatcgcaactgta 86
