miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00900;mir-255;U64847.1/31040-31149 6239:Caenorhabditis elegans
Length = 110
Score = 218 bits (110), Expect = 1e-56
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 cagtggttcgactaaattttggaggtaagaaatctttgtagttctccgtattgtgacgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagtggttcgactaaattttggaggtaagaaatctttgtagttctccgtattgtgacgtg 60
Query: 61 aaaactgaagagattttttacagacttcacaaatttgaaatatattcctg 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaactgaagagattttttacagacttcacaaatttgaaatatattcctg 110
>RF00900;mir-255;ABEG01005567.1/3225-3337 135651:Caenorhabditis
brenneri
Length = 113
Score = 75.8 bits (38), Expect = 1e-13
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 23 aggtaagaaatctttgtagttctccgtattgtgacgtgaaaactgaagagattttttaca 82
||||||||||||||||| ||| ||||| || |||| |||||||||||||||||||||||
Sbjct: 26 aggtaagaaatctttgtggttttccgttatgagacgagaaaactgaagagattttttaca 85
Query: 83 ga 84
||
Sbjct: 86 ga 87
>RF00900;mir-255;AAGD02012095.1/86646-86750 31234:Caenorhabditis
remanei
Length = 105
Score = 67.9 bits (34), Expect = 3e-11
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 23 aggtaagaaatctttgtagttctccgtattgtgacgtgaaaactgaagagattttttaca 82
||||||||||||||||| ||| ||||| || ||| |||||||||||||||||||||||
Sbjct: 21 aggtaagaaatctttgtggttttccgtgtttaaacgcgaaaactgaagagattttttaca 80
Query: 83 ga 84
||
Sbjct: 81 ga 82
>RF00900;mir-255;CAAC02000488.1/1370571-1370684
6238:Caenorhabditis briggsae
Length = 114
Score = 60.0 bits (30), Expect = 6e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 23 aggtaagaaatctttgtagttctccgtattgtgacgtgaaaactgaagagattttttaca 82
||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 27 aggtaagaaatctttgtagttttccgcgagtcaacgtgaaaactgaagagattttttaca 86
Query: 83 ga 84
||
Sbjct: 87 ga 88
