miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00799;mir-354;AAGD02005008.1/3108-3217 31234:Caenorhabditis
remanei
Length = 110
Score = 137 bits (69), Expect = 3e-32
Identities = 92/97 (94%), Gaps = 2/97 (2%)
Strand = Plus / Plus
Query: 1 cagagccgactaagcaccttggtgcggctgcagacgggtatccggctcgacgttcataca 60
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 2 cagagccgactaagcgccttggtgcggctgcagacgggtaaccggctcgacgttcattca 61
Query: 61 tca-cgacttctttccttttaccttgtttgttgctgc 96
||| |||| ||||||||||||||||||||||||||||
Sbjct: 62 tcaccgac-tctttccttttaccttgtttgttgctgc 97
>RF00799;mir-354;ABEG01001653.1/28967-28849 135651:Caenorhabditis
brenneri
Length = 119
Score = 99.6 bits (50), Expect = 7e-21
Identities = 93/103 (90%), Gaps = 7/103 (6%)
Strand = Plus / Plus
Query: 1 cagagccgactaagcaccttggtgcggctgcagacgggtatccggctcgacgttcat-ac 59
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 2 cagagccgattaagcaccttggtgcggctgcagacgggtaaccggctcgacgttcatcac 61
Query: 60 atca----cga-cttctttcctttta-ccttgtttgttgctgc 96
|||| ||| |||||||||| ||| ||||||||||||||||
Sbjct: 62 atcatccgcgaccttctttcctattacccttgtttgttgctgc 104
>RF00799;mir-354;ABLE02026293.1/4553-4653 281687:Caenorhabditis
japonica
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 72 ttccttttaccttgtttgttgc 93
||||||||||||||||||||||
Sbjct: 63 ttccttttaccttgtttgttgc 84
