miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00955;mir-1829;Z78542.1/11427-11486 6239:Caenorhabditis elegans
Length = 60
Score = 119 bits (60), Expect = 4e-27
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 aagcgatcttctagatggttgtaaaacatcgagtattacaaccactggaatttctctatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagcgatcttctagatggttgtaaaacatcgagtattacaaccactggaatttctctatt 60
>RF00955;mir-1829;Z69660.1/8998-8939 6239:Caenorhabditis elegans
Length = 60
Score = 79.8 bits (40), Expect = 3e-15
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 13 agatggttgtaaaacatcgagtattacaaccactggaatttctctatt 60
||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 13 agatggttgtaaaacattgagtactacaaccactggaatttctctatt 60
>RF00955;mir-1829;Z79601.1/10621-10562 6239:Caenorhabditis elegans
Length = 60
Score = 67.9 bits (34), Expect = 1e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 19 ttgtaaaacatcgagtattacaaccactggaatttctctatt 60
|||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 19 ttgtaaaaaatcgagtattacaaccattggaatttctctatt 60
>RF00955;mir-1829;U97550.2/31325-31384 6239:Caenorhabditis elegans
Length = 60
Score = 50.1 bits (25), Expect = 3e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 28 atcgagtattacaaccactggaatttctctatt 60
||||||||| ||||||||| |||||||||||||
Sbjct: 28 atcgagtatgacaaccactcgaatttctctatt 60
>RF00955;mir-1829;Z69903.1/850-791 6239:Caenorhabditis elegans
Length = 60
Score = 46.1 bits (23), Expect = 4e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 18 gttgtaaaacatcgagtattacaaccactggaatttctctatt 60
||||| ||| || |||||| |||||||||| ||||||||||||
Sbjct: 18 gttgtcaaaaattgagtatgacaaccactgcaatttctctatt 60