miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00955;mir-1829;Z69903.1/850-791 6239:Caenorhabditis elegans
Length = 60
Score = 119 bits (60), Expect = 5e-27
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 7 aagagcgcttgtagtgagttgtcaaaaattgagtatgacaaccactgcaatttctctatt 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagagcgcttgtagtgagttgtcaaaaattgagtatgacaaccactgcaatttctctatt 60
>RF00955;mir-1829;U97550.2/31325-31384 6239:Caenorhabditis elegans
Length = 60
Score = 63.9 bits (32), Expect = 3e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 19 agtgagttgtcaaaaattgagtatgacaaccactgcaatttctctatt 66
|||||| |||||||||| |||||||||||||||| ||||||||||||
Sbjct: 13 agtgagatgtcaaaaatcgagtatgacaaccactcgaatttctctatt 60
>RF00955;mir-1829;Z78542.1/11427-11486 6239:Caenorhabditis elegans
Length = 60
Score = 46.1 bits (23), Expect = 6e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 24 gttgtcaaaaattgagtatgacaaccactgcaatttctctatt 66
||||| ||| || |||||| |||||||||| ||||||||||||
Sbjct: 18 gttgtaaaacatcgagtattacaaccactggaatttctctatt 60
>RF00955;mir-1829;Z69660.1/8998-8939 6239:Caenorhabditis elegans
Length = 60
Score = 46.1 bits (23), Expect = 6e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 24 gttgtcaaaaattgagtatgacaaccactgcaatttctctatt 66
||||| ||| |||||||| |||||||||| ||||||||||||
Sbjct: 18 gttgtaaaacattgagtactacaaccactggaatttctctatt 60
>RF00955;mir-1829;Z79601.1/10621-10562 6239:Caenorhabditis elegans
Length = 60
Score = 44.1 bits (22), Expect = 2e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 25 ttgtcaaaaattgagtatgacaaccactgcaatttctctatt 66
|||| |||||| |||||| ||||||| || ||||||||||||
Sbjct: 19 ttgtaaaaaatcgagtattacaaccattggaatttctctatt 60
