miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00047;mir-2;AAGD02006756.1/79087-79015 31234:Caenorhabditis
          remanei
          Length = 73

 Score =  145 bits (73), Expect = 1e-34
 Identities = 73/73 (100%)
 Strand = Plus / Plus

                                                                      
Query: 13 aagcccgtcaaagtggctcgtgttatgttgaatcttgaagtaatcatatcacagccagct 72
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aagcccgtcaaagtggctcgtgttatgttgaatcttgaagtaatcatatcacagccagct 60

                       
Query: 73 ttgatgtgcttcc 85
          |||||||||||||
Sbjct: 61 ttgatgtgcttcc 73




>RF00047;mir-2;ABEG01010026.1/20408-20482 135651:Caenorhabditis
          brenneri
          Length = 75

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 55 atcatatcacagccagctttgatgtgctt 83
          |||||||||||||||||||||||||||||
Sbjct: 45 atcatatcacagccagctttgatgtgctt 73




>RF00047;mir-2;CAAC02000589.1/1009397-1009308 6238:Caenorhabditis
          briggsae
          Length = 90

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 56 tcatatcacagccagctttgatgtgct 82
          |||||||||||||||||||||||||||
Sbjct: 61 tcatatcacagccagctttgatgtgct 87




>RF00047;mir-2;Z83731.1/29638-29566 6239:Caenorhabditis elegans
          Length = 73

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 56 tcatatcacagccagctttgatgtgct 82
          |||||||||||||||||||||||||||
Sbjct: 44 tcatatcacagccagctttgatgtgct 70




>RF00047;mir-2;AAQA01003088.1/958-1028 6279:Brugia malayi
          Length = 71

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 56 tcatatcacagccagctttgatgtg 80
          |||||||||||||||||||||||||
Sbjct: 42 tcatatcacagccagctttgatgtg 66




>RF00047;mir-2;AASC02030054.1/10531-10596 6500:Aplysia californica
          (California sea hare)
          Length = 66

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 56 tcatatcacagccagctttgatgtgcttc 84
          ||||||||||||||||||||||| |||||
Sbjct: 37 tcatatcacagccagctttgatgagcttc 65




>RF00047;mir-2;AAZX01013101.1/19937-20004 7425:Nasonia vitripennis
          (jewel wasp)
          Length = 68

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 catatcacagccagctttgatgtgc 81
          |||||||||||||||||||||||||
Sbjct: 40 catatcacagccagctttgatgtgc 64




>RF00047;mir-2;AAZO01007079.1/41397-41469 121224:Pediculus humanus
          corporis (human body louse)
          Length = 73

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 55 atcatatcacagccagctttgatg 78
          ||||||||||||||||||||||||
Sbjct: 43 atcatatcacagccagctttgatg 66




>RF00047;mir-2;AAJJ01001714.1/2814-2878 7070:Tribolium castaneum
          (red flour beetle)
          Length = 65

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 55 atcatatcacagccagctttgatg 78
          ||||||||||||||||||||||||
Sbjct: 35 atcatatcacagccagctttgatg 58




>RF00047;mir-2;AAZO01007079.1/41194-41254 121224:Pediculus humanus
          corporis (human body louse)
          Length = 61

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 56 tcatatcacagccagctttgatg 78
          |||||||||||||||||||||||
Sbjct: 32 tcatatcacagccagctttgatg 54




>RF00047;mir-2;ABLF01009126.1/4189-4122 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 68

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 56 tcatatcacagccagctttgatg 78
          |||||||||||||||||||||||
Sbjct: 39 tcatatcacagccagctttgatg 61




>RF00047;mir-2;AADG05000005.1/25868-25935 7460:Apis mellifera
          (honey bee)
          Length = 68

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 56 tcatatcacagccagctttgatg 78
          |||||||||||||||||||||||
Sbjct: 39 tcatatcacagccagctttgatg 61




>RF00047;mir-2;AAGE02012793.1/16205-16139 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 67

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 56 tcatatcacagccagctttgatg 78
          |||||||||||||||||||||||
Sbjct: 38 tcatatcacagccagctttgatg 60




>RF00047;mir-2;AAAB01008807.1/11607145-11607220 180454:Anopheles
          gambiae str. PEST
          Length = 76

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 56 tcatatcacagccagctttgatg 78
          |||||||||||||||||||||||
Sbjct: 47 tcatatcacagccagctttgatg 69




>RF00047;mir-2;AASS01038618.1/536-465 7240:Drosophila simulans
          Length = 72

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 57 catatcacagccagctttgatgtgctt 83
          |||||||||||||||||||||| ||||
Sbjct: 44 catatcacagccagctttgatgagctt 70




>RF00047;mir-2;AAPU01010520.1/77496-77569 7230:Drosophila
          mojavensis
          Length = 74

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 57 catatcacagccagctttgatgtgctt 83
          |||||||||||||||||||||| ||||
Sbjct: 46 catatcacagccagctttgatgagctt 72




>RF00047;mir-2;AANI01013749.1/162154-162082 7244:Drosophila
          virilis
          Length = 73

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 57 catatcacagccagctttgatgtgctt 83
          |||||||||||||||||||||| ||||
Sbjct: 45 catatcacagccagctttgatgagctt 71




>RF00047;mir-2;AAJJ01001714.1/2663-2727 7070:Tribolium castaneum
          (red flour beetle)
          Length = 65

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 56 tcatatcacagccagctttgatg 78
          |||||||||||||||||||||||
Sbjct: 36 tcatatcacagccagctttgatg 58




>RF00047;mir-2;ABJB010692301.1/11251-11184 6945:Ixodes scapularis
          (black-legged tick)
          Length = 68

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 56 tcatatcacagccagctttgatg 78
          |||||||||||||||||||||||
Sbjct: 39 tcatatcacagccagctttgatg 61




>RF00047;mir-2;AM453782.2/459-389 29760:Vitis vinifera
          Length = 71

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 54 aatcatatcacagccagctttg 75
          ||||||||||||||||||||||
Sbjct: 40 aatcatatcacagccagctttg 61




>RF00047;mir-2;AASC02030054.1/10795-10859 6500:Aplysia californica
          (California sea hare)
          Length = 65

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 54 aatcatatcacagccagctttgatgtgctt 83
          ||||||||||||| ||||||||||| ||||
Sbjct: 34 aatcatatcacagtcagctttgatgagctt 63




>RF00047;mir-2;AASC02030054.1/11043-11110 6500:Aplysia californica
          (California sea hare)
          Length = 68

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 57 catatcacagccagctttgatg 78
          ||||||||||||||||||||||
Sbjct: 40 catatcacagccagctttgatg 61




>RF00047;mir-2;BABH01007323.1/5785-5717 7091:Bombyx mori (domestic
          silkworm)
          Length = 69

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 57 catatcacagccagctttgatg 78
          ||||||||||||||||||||||
Sbjct: 41 catatcacagccagctttgatg 62




>RF00047;mir-2;AAWU01020422.1/10370-10299 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 72

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 57 catatcacagccagctttgatg 78
          ||||||||||||||||||||||
Sbjct: 44 catatcacagccagctttgatg 65




>RF00047;mir-2;AAQB01006412.1/121627-121699 7260:Drosophila
          willistoni
          Length = 73

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 57 catatcacagccagctttgatg 78
          ||||||||||||||||||||||
Sbjct: 45 catatcacagccagctttgatg 66




>RF00047;mir-2;AAFS01000655.1/43310-43241 46245:Drosophila
          pseudoobscura pseudoobscura
          Length = 70

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 57 catatcacagccagctttgatg 78
          ||||||||||||||||||||||
Sbjct: 42 catatcacagccagctttgatg 63




>RF00047;mir-2;AANI01013749.1/161880-161816 7244:Drosophila
          virilis
          Length = 65

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 57 catatcacagccagctttgatg 78
          ||||||||||||||||||||||
Sbjct: 37 catatcacagccagctttgatg 58