miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00685;mir-36;AAGD02001682.1/66179-66083 31234:Caenorhabditis
remanei
Length = 97
Score = 129 bits (65), Expect = 6e-30
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 1 gctggcttggacctttgctggtttccctcggttatatttctnnnnnnnctatcaccgggt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 9 gctggcttggacctttgctggtttccctcggttatatttctaaaaaaactatcaccgggt 68
Query: 61 gaacattggtgcaggtccaatccgcc 86
||||||||||||||||||||||||||
Sbjct: 69 gaacattggtgcaggtccaatccgcc 94
>RF00685;mir-36;AAGD02001682.1/67544-67446 31234:Caenorhabditis
remanei
Length = 99
Score = 73.8 bits (37), Expect = 3e-13
Identities = 72/85 (84%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 gctggcttggacctttgctggtttcc--ctcggttatatttctnnnnnnnctatcaccgg 58
||||| |||||||||||||||||| | ||||||||||||||| |||||||||
Sbjct: 9 gctggattggacctttgctggttttcacctcggttatatttctagtatgattatcaccgg 68
Query: 59 gtgaacattggtgcaggtccaatcc 83
|||||||| ||||||||||||||||
Sbjct: 69 gtgaacatcggtgcaggtccaatcc 93
>RF00685;mir-36;AAGD02001682.1/68394-68296 31234:Caenorhabditis
remanei
Length = 99
Score = 73.8 bits (37), Expect = 3e-13
Identities = 72/85 (84%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 gctggcttggacctttgctggtttc--cctcggttatatttctnnnnnnnctatcaccgg 58
||||| |||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 9 gctggattggacctttgctggtttttgcctcggttatatttcaagtgtgactatcaccgg 68
Query: 59 gtgaacattggtgcaggtccaatcc 83
|||||||| ||||||||||||||||
Sbjct: 69 gtgaacatcggtgcaggtccaatcc 93
>RF00685;mir-36;AAGD02001682.1/67909-67811 31234:Caenorhabditis
remanei
Length = 99
Score = 58.0 bits (29), Expect = 2e-08
Identities = 70/85 (82%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 1 gctggcttggacctttgctggtttc--cctcggttatatttctnnnnnnnctatcaccgg 58
||||| |||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 9 gctggattggacctttgctggtttttacctcggttatatttcaagcacgattatcaccgg 68
Query: 59 gtgaacattggtgcaggtccaatcc 83
||||| || ||||||||||||||||
Sbjct: 69 gtgaatatcggtgcaggtccaatcc 93
>RF00685;mir-36;CAAC02000527.1/130854-130955 6238:Caenorhabditis
briggsae
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 50 tatcaccgggtgaacattggtgcaggtccaatcc 83
|||||||||||||| |||||| ||||||| ||||
Sbjct: 63 tatcaccgggtgaaaattggtacaggtccgatcc 96
>RF00685;mir-36;AAGD02001682.1/67036-66933 31234:Caenorhabditis
remanei
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 ctatcaccgggtgaacattggt 70
||||||||||||||||||||||
Sbjct: 64 ctatcaccgggtgaacattggt 85
>RF00685;mir-36;CAAC02000527.1/135017-135118 6238:Caenorhabditis
briggsae
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 50 tatcaccgggtgaacattggtgcaggtccaatcc 83
|||||||||||||| |||||| ||||||| ||||
Sbjct: 63 tatcaccgggtgaaaattggtacaggtccgatcc 96
