miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00685;mir-36;AAGD02001682.1/67544-67446 31234:Caenorhabditis
remanei
Length = 99
Score = 143 bits (72), Expect = 4e-34
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 1 gctggattggacctttgctggttttcacctcggttatacttcaagtgtgattatcaccgg 60
|||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||
Sbjct: 9 gctggattggacctttgctggttttcacctcggttatatttctagtatgattatcaccgg 68
Query: 61 gtgaacattggtgcaggtccaatcctgc 88
|||||||| |||||||||||||||||||
Sbjct: 69 gtgaacatcggtgcaggtccaatcctgc 96
>RF00685;mir-36;AAGD02001682.1/68394-68296 31234:Caenorhabditis
remanei
Length = 99
Score = 135 bits (68), Expect = 1e-31
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 1 gctggattggacctttgctggttttcacctcggttatacttcaagtgtgattatcaccgg 60
||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 9 gctggattggacctttgctggtttttgcctcggttatatttcaagtgtgactatcaccgg 68
Query: 61 gtgaacattggtgcaggtccaatcctgc 88
|||||||| |||||||||||||||||||
Sbjct: 69 gtgaacatcggtgcaggtccaatcctgc 96
>RF00685;mir-36;AAGD02001682.1/67909-67811 31234:Caenorhabditis
remanei
Length = 99
Score = 119 bits (60), Expect = 6e-27
Identities = 81/88 (92%)
Strand = Plus / Plus
Query: 1 gctggattggacctttgctggttttcacctcggttatacttcaagtgtgattatcaccgg 60
||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||
Sbjct: 9 gctggattggacctttgctggtttttacctcggttatatttcaagcacgattatcaccgg 68
Query: 61 gtgaacattggtgcaggtccaatcctgc 88
||||| || |||||||||||||||||||
Sbjct: 69 gtgaatatcggtgcaggtccaatcctgc 96
>RF00685;mir-36;AAGD02001682.1/67136-67038 31234:Caenorhabditis
remanei
Length = 99
Score = 97.6 bits (49), Expect = 2e-20
Identities = 73/81 (90%)
Strand = Plus / Plus
Query: 8 tggacctttgctggttttcacctcggttatacttcaagtgtgattatcaccgggtgaaca 67
||||||||||||||||||||||||||||||| ||||| | ||||||||| ||||||| ||
Sbjct: 16 tggacctttgctggttttcacctcggttatatttcaattatgattatcatcgggtgagca 75
Query: 68 ttggtgcaggtccaatcctgc 88
| |||| |||||||| |||||
Sbjct: 76 tcggtgtaggtccaaacctgc 96
>RF00685;mir-36;AAGD02001682.1/66179-66083 31234:Caenorhabditis
remanei
Length = 97
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 52 tatcaccgggtgaacattggtgcaggtccaatcc 85
||||||||||||||||||||||||||||||||||
Sbjct: 58 tatcaccgggtgaacattggtgcaggtccaatcc 91
>RF00685;mir-36;AAGD02001682.1/67297-67199 31234:Caenorhabditis
remanei
Length = 99
Score = 63.9 bits (32), Expect = 3e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 18 ctggttttcacctcggttatacttcaagtgtgattatcaccgggtgaa 65
||||||||| ||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 26 ctggttttcgcctcggtcatatttcaagtatgattatcaccgggtgaa 73
>RF00685;mir-36;ABEG01007333.1/6034-6133 135651:Caenorhabditis
brenneri
Length = 100
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 4 ggattggacctttgctggttttcacctcggttatacttc 42
|||| |||||| |||||||||||||| ||||||||||||
Sbjct: 12 ggatcggacctatgctggttttcaccgcggttatacttc 50
>RF00685;mir-36;CAAC02000527.1/135017-135118 6238:Caenorhabditis
briggsae
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 51 ttatcaccgggtgaacattggtgcaggtccaatcct 86
||||||||||||||| |||||| ||||||| |||||
Sbjct: 62 ttatcaccgggtgaaaattggtacaggtccgatcct 97
>RF00685;mir-36;CAAC02000527.1/130854-130955 6238:Caenorhabditis
briggsae
Length = 102
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 51 ttatcaccgggtgaacattggtgcaggtccaatcc 85
||||||||||||||| |||||| ||||||| ||||
Sbjct: 62 ttatcaccgggtgaaaattggtacaggtccgatcc 96
