miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00685;mir-36;AAGD02001682.1/66886-66788 31234:Caenorhabditis
remanei
Length = 99
Score = 123 bits (62), Expect = 4e-28
Identities = 80/86 (93%)
Strand = Plus / Plus
Query: 1 tcggtgggatcggacctacactggtttttgcttcggtgatatttcaagaatgattatcac 60
||||| |||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||
Sbjct: 6 tcggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcac 65
Query: 61 cgggtgaaaatcaaggcaggtccgat 86
||||||||||||| ||||||||||||
Sbjct: 66 cgggtgaaaatcagggcaggtccgat 91
>RF00685;mir-36;AAGD02001682.1/68489-68395 31234:Caenorhabditis
remanei
Length = 95
Score = 119 bits (60), Expect = 7e-27
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 7 ggatcggacctacactggtttttgcttcggtgatatttcaagaatgattatcaccgggtg 66
||||||||||| ||||| |||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 12 ggatcggacctccactgattttcgcttcggtgatatttcaagaacgattatcaccgggtg 71
Query: 67 aaaatcaaggcaggtccgat 86
||||||| ||||||||||||
Sbjct: 72 aaaatcagggcaggtccgat 91
>RF00685;mir-36;AAGD02001682.1/67297-67199 31234:Caenorhabditis
remanei
Length = 99
Score = 87.7 bits (44), Expect = 2e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 7 ggatcggacctacactggtttttgcttcggtgatatttcaagaatgattatcaccgggtg 66
||||||| ||| |||||||||| || ||||| |||||||||| |||||||||||||||||
Sbjct: 12 ggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccgggtg 71
Query: 67 aaaatcaaggcaggtccgat 86
||||||| ||||| |||||
Sbjct: 72 aaaatcagagcagggccgat 91
>RF00685;mir-36;AAGD02001682.1/68606-68507 31234:Caenorhabditis
remanei
Length = 100
Score = 81.8 bits (41), Expect = 1e-15
Identities = 72/81 (88%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 7 ggatcggacctacactggtttttgcttcggtgatatttc-aagaatgattatcaccgggt 65
||||||||||| |||||||||||||| |||| ||||||| ||||| | |||||||||||
Sbjct: 12 ggatcggacctccactggtttttgctgcggtaatatttctcagaatcaatatcaccgggt 71
Query: 66 gaaaatcaaggcaggtccgat 86
||||||| ||||||||||||
Sbjct: 72 aaaaatcagggcaggtccgat 92
>RF00685;mir-36;AAGD02001682.1/68131-68034 31234:Caenorhabditis
remanei
Length = 98
Score = 65.9 bits (33), Expect = 9e-11
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 34 cggtgatatttcaagaatgattatcaccgggtgaaaatcaaggcaggtccgatctcaccg 93
|||| ||||||||| |||||||||||||||||||||||| ||||| |||||| |||||
Sbjct: 38 cggtcatatttcaaatatgattatcaccgggtgaaaatcagagcagggccgatcccaccg 97
Query: 94 a 94
|
Sbjct: 98 a 98
>RF00685;mir-36;AAGD02001682.1/67909-67811 31234:Caenorhabditis
remanei
Length = 99
Score = 56.0 bits (28), Expect = 8e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 21 ctggtttttgcttcggtgatatttcaagaatgattatcaccgggtgaa 68
||||||||| | ||||| |||||||||| | |||||||||||||||||
Sbjct: 26 ctggtttttacctcggttatatttcaagcacgattatcaccgggtgaa 73
>RF00685;mir-36;ABEG01007334.1/1414-1515 135651:Caenorhabditis
brenneri
Length = 102
Score = 56.0 bits (28), Expect = 8e-08
Identities = 58/67 (86%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 7 ggatcggacctacactggtttttgcttcggtgatatttc--aagaatgattatcaccggg 64
||||||| ||| | ||||||||||| |||||||||||| | ||||||||||||||||
Sbjct: 12 ggatcgggcctgcgctggtttttgccgcggtgatatttctgagcaatgattatcaccggg 71
Query: 65 tgaaaat 71
|||||||
Sbjct: 72 tgaaaat 78
>RF00685;mir-36;AAGD02001682.1/68394-68296 31234:Caenorhabditis
remanei
Length = 99
Score = 56.0 bits (28), Expect = 8e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 21 ctggtttttgcttcggtgatatttcaagaatgattatcaccgggtgaa 68
||||||||||| ||||| |||||||||| ||| ||||||||||||||
Sbjct: 26 ctggtttttgcctcggttatatttcaagtgtgactatcaccgggtgaa 73
>RF00685;mir-36;CAAC02000450.1/1779180-1779278 6238:Caenorhabditis
briggsae
Length = 99
Score = 50.1 bits (25), Expect = 5e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 23 ggtttttgcttcggtgatatttcaagaatgattatcaccgggtgaaaat 71
||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 28 ggtttttgcttcggtgatattcgaagagccgttatcaccgggtgaaaat 76
>RF00685;mir-36;AAGD02001682.1/67544-67446 31234:Caenorhabditis
remanei
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 33 tcggtgatatttcaagaatgattatcaccgggtgaa 68
||||| ||||||| || |||||||||||||||||||
Sbjct: 38 tcggttatatttctagtatgattatcaccgggtgaa 73
>RF00685;mir-36;ABEG01007334.1/2290-2391 135651:Caenorhabditis
brenneri
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 atgattatcaccgggtgaaaat 71
||||||||||||||||||||||
Sbjct: 57 atgattatcaccgggtgaaaat 78
>RF00685;mir-36;CAAC02000450.1/1779418-1779517 6238:Caenorhabditis
briggsae
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 25 tttttgcttcggtgatatttcaagaatgattatcaccgggtgaaaa 70
||||| ||||||||||||| |||||| ||||||||||||||||
Sbjct: 31 tttttccttcggtgatattcgaagaatcgctatcaccgggtgaaaa 76
>RF00685;mir-36;ABEG01007334.1/4671-4772 135651:Caenorhabditis
brenneri
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 atgattatcaccgggtgaaaat 71
||||||||||||||||||||||
Sbjct: 57 atgattatcaccgggtgaaaat 78
