miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00685;mir-36;AAGD02001682.1/66886-66788 31234:Caenorhabditis
remanei
Length = 99
Score = 186 bits (94), Expect = 3e-47
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 tcggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tcggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcac 65
Query: 61 cgggtgaaaatcagggcaggtccgattccaccga 94
||||||||||||||||||||||||||||||||||
Sbjct: 66 cgggtgaaaatcagggcaggtccgattccaccga 99
>RF00685;mir-36;AAGD02001682.1/68489-68395 31234:Caenorhabditis
remanei
Length = 95
Score = 125 bits (63), Expect = 1e-28
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 3 ggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcaccg 62
||||||||||||||| ||||| |||||||| |||||||| ||| |||| |||||||||||
Sbjct: 8 ggtcggatcggacctccactgattttcgcttcggtgatatttcaagaacgattatcaccg 67
Query: 63 ggtgaaaatcagggcaggtccgattcc 89
|||||||||||||||||||||||||||
Sbjct: 68 ggtgaaaatcagggcaggtccgattcc 94
>RF00685;mir-36;AAGD02001682.1/67297-67199 31234:Caenorhabditis
remanei
Length = 99
Score = 101 bits (51), Expect = 2e-21
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 3 ggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcaccg 62
||||||||||| ||| ||||||||||||| |||| ||| ||| || |||||||||||||
Sbjct: 8 ggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccg 67
Query: 63 ggtgaaaatcagggcaggtccgattccaccg 93
|||||||||||| ||||| ||||||||||||
Sbjct: 68 ggtgaaaatcagagcagggccgattccaccg 98
>RF00685;mir-36;AAGD02001682.1/68606-68507 31234:Caenorhabditis
remanei
Length = 100
Score = 97.6 bits (49), Expect = 2e-20
Identities = 80/89 (89%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 3 ggtcggatcggacctacactggttttcgctgcggtgatacttcg-agaatgattatcacc 61
||||||||||||||| |||||||||| |||||||| ||| ||| ||||| | |||||||
Sbjct: 8 ggtcggatcggacctccactggtttttgctgcggtaatatttctcagaatcaatatcacc 67
Query: 62 gggtgaaaatcagggcaggtccgattcca 90
|||| ||||||||||||||||||||||||
Sbjct: 68 gggtaaaaatcagggcaggtccgattcca 96
>RF00685;mir-36;AAGD02001682.1/68131-68034 31234:Caenorhabditis
remanei
Length = 98
Score = 79.8 bits (40), Expect = 6e-15
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 3 ggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcaccg 62
||||||||||| | | |||||||| |||| ||||| ||| ||| | |||||||||||||
Sbjct: 7 ggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatcaccg 66
Query: 63 ggtgaaaatcagggcaggtccgattccaccga 94
|||||||||||| ||||| ||||| |||||||
Sbjct: 67 ggtgaaaatcagagcagggccgatcccaccga 98
>RF00685;mir-36;ABEG01007334.1/1414-1515 135651:Caenorhabditis
brenneri
Length = 102
Score = 54.0 bits (27), Expect = 3e-07
Identities = 59/67 (88%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 7 ggatcggacctacactggttttcgctgcggtgatacttc-gag-aatgattatcaccggg 64
||||||| ||| | |||||||| || ||||||||| ||| ||| ||||||||||||||||
Sbjct: 12 ggatcgggcctgcgctggtttttgccgcggtgatatttctgagcaatgattatcaccggg 71
Query: 65 tgaaaat 71
|||||||
Sbjct: 72 tgaaaat 78
>RF00685;mir-36;AAGD02001682.1/67544-67446 31234:Caenorhabditis
remanei
Length = 99
Score = 46.1 bits (23), Expect = 8e-05
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 21 ctggttttcgctgcggtgatacttcgagaatgattatcaccgggtgaaaatcagggcagg 80
||||||||| | |||| ||| ||| || ||||||||||||||||||| ||| | |||||
Sbjct: 26 ctggttttcacctcggttatatttctagtatgattatcaccgggtgaacatcggtgcagg 85
Query: 81 tcc 83
|||
Sbjct: 86 tcc 88
>RF00685;mir-36;ABEG01007333.1/6034-6133 135651:Caenorhabditis
brenneri
Length = 100
Score = 46.1 bits (23), Expect = 8e-05
Identities = 60/71 (84%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 1 tcggtcggatcggacctacactggttttcgctgcggtgatacttc-gagaatgattatca 59
|||| ||||||||||||| ||||||||| | ||||| ||||||| | ||| |||||||
Sbjct: 6 tcggccggatcggacctatgctggttttcaccgcggttatacttctaacaataattatca 65
Query: 60 ccgggtgaaaa 70
|||||| ||||
Sbjct: 66 ccgggttaaaa 76
>RF00685;mir-36;CAAC02000527.1/131292-131393 6238:Caenorhabditis
briggsae
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 52 gattatcaccgggtgaaaatcagggcaggtccga 85
|||||||||||||||| ||| ||| |||||||||
Sbjct: 60 gattatcaccgggtgacaattaggacaggtccga 93
>RF00685;mir-36;ABEG01007334.1/2290-2391 135651:Caenorhabditis
brenneri
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 atgattatcaccgggtgaaaat 71
||||||||||||||||||||||
Sbjct: 57 atgattatcaccgggtgaaaat 78
>RF00685;mir-36;ABEG01007334.1/4671-4772 135651:Caenorhabditis
brenneri
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 atgattatcaccgggtgaaaat 71
||||||||||||||||||||||
Sbjct: 57 atgattatcaccgggtgaaaat 78
