miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00685;mir-36;AAGD02001682.1/68131-68034 31234:Caenorhabditis
remanei
Length = 98
Score = 182 bits (92), Expect = 5e-46
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 tggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatcacc 65
Query: 61 gggtgaaaatcagagcagggccgatcccaccg 92
||||||||||||||||||||||||||||||||
Sbjct: 66 gggtgaaaatcagagcagggccgatcccaccg 97
>RF00685;mir-36;AAGD02001682.1/67297-67199 31234:Caenorhabditis
remanei
Length = 99
Score = 133 bits (67), Expect = 4e-31
Identities = 85/91 (93%)
Strand = Plus / Plus
Query: 2 ggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatcaccg 61
||||||||||||| | |||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 8 ggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccg 67
Query: 62 ggtgaaaatcagagcagggccgatcccaccg 92
|||||||||||||||||||||||| ||||||
Sbjct: 68 ggtgaaaatcagagcagggccgattccaccg 98
>RF00685;mir-36;AAGD02001682.1/66886-66788 31234:Caenorhabditis
remanei
Length = 99
Score = 77.8 bits (39), Expect = 2e-14
Identities = 78/91 (85%)
Strand = Plus / Plus
Query: 2 ggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatcaccg 61
||||||||||| | | |||||||| |||| ||||| ||| ||| | |||||||||||||
Sbjct: 8 ggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcaccg 67
Query: 62 ggtgaaaatcagagcagggccgatcccaccg 92
|||||||||||| ||||| ||||| ||||||
Sbjct: 68 ggtgaaaatcagggcaggtccgattccaccg 98
>RF00685;mir-36;AAGD02001682.1/68489-68395 31234:Caenorhabditis
remanei
Length = 95
Score = 65.9 bits (33), Expect = 8e-11
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 1 tggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatcacc 60
|||||||||||| | | ||||| || |||| |||| ||||||||| | ||||||||||
Sbjct: 7 tggtcggatcggacctccactgattttcgcttcggtgatatttcaagaacgattatcacc 66
Query: 61 gggtgaaaatcagagcagggccgat 85
||||||||||||| ||||| |||||
Sbjct: 67 gggtgaaaatcagggcaggtccgat 91
>RF00685;mir-36;AAGD02001682.1/67544-67446 31234:Caenorhabditis
remanei
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 20 ctggttctcgccgcggtcatatttcaaatatgattatcaccgggtgaa 67
|||||| || || |||| ||||||| | ||||||||||||||||||||
Sbjct: 26 ctggttttcacctcggttatatttctagtatgattatcaccgggtgaa 73
>RF00685;mir-36;AAGD02001682.1/67136-67038 31234:Caenorhabditis
remanei
Length = 99
Score = 46.1 bits (23), Expect = 8e-05
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 20 ctggttctcgccgcggtcatatttcaaatatgattatcaccgggtga 66
|||||| || || |||| ||||||||| ||||||||||| |||||||
Sbjct: 26 ctggttttcacctcggttatatttcaattatgattatcatcgggtga 72
>RF00685;mir-36;ABEG01007334.1/1414-1515 135651:Caenorhabditis
brenneri
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 atgattatcaccgggtgaaaat 70
||||||||||||||||||||||
Sbjct: 57 atgattatcaccgggtgaaaat 78
>RF00685;mir-36;ABEG01007334.1/2290-2391 135651:Caenorhabditis
brenneri
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 atgattatcaccgggtgaaaat 70
||||||||||||||||||||||
Sbjct: 57 atgattatcaccgggtgaaaat 78
>RF00685;mir-36;ABEG01007334.1/4671-4772 135651:Caenorhabditis
brenneri
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 atgattatcaccgggtgaaaat 70
||||||||||||||||||||||
Sbjct: 57 atgattatcaccgggtgaaaat 78
