miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00685;mir-36;AAGD02001682.1/68294-68188 31234:Caenorhabditis
remanei
Length = 107
Score = 194 bits (98), Expect = 1e-49
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 ctgacgaggggaaccgtgctggtttcgacctcggtaataggtccatatatgagaagaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ctgacgaggggaaccgtgctggtttcgacctcggtaataggtccatatatgagaagaacc 67
Query: 61 tatcaccgggtggaaactggtacgggtccccgagtcag 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 68 tatcaccgggtggaaactggtacgggtccccgagtcag 105
>RF00685;mir-36;AAGD02001682.1/66465-66360 31234:Caenorhabditis
remanei
Length = 106
Score = 123 bits (62), Expect = 4e-28
Identities = 89/98 (90%)
Strand = Plus / Plus
Query: 1 ctgacgaggggaaccgtgctggtttcgacctcggtaataggtccatatatgagaagaacc 60
||||||| ||||||||||||||||||||| ||||||||||||| | |||| | || |||
Sbjct: 7 ctgacgacgggaaccgtgctggtttcgacttcggtaataggtcaaaatataaaaaatacc 66
Query: 61 tatcaccgggtggaaactggtacgggtccccgagtcag 98
||||||||||||||||||||| ||||||||||||||||
Sbjct: 67 tatcaccgggtggaaactggtgcgggtccccgagtcag 104
>RF00685;mir-36;AAGD02001682.1/67443-67345 31234:Caenorhabditis
remanei
Length = 99
Score = 73.8 bits (37), Expect = 4e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 60 ctatcaccgggtggaaactggtacgggtccccgagtc 96
|||||||||||||||||||||||||||||||||||||
Sbjct: 59 ctatcaccgggtggaaactggtacgggtccccgagtc 95
>RF00685;mir-36;AAGD02001682.1/66080-65982 31234:Caenorhabditis
remanei
Length = 99
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 63 tcaccgggtggaaactggtacgggtccccgagtcag 98
||||||| ||||||||||||||||||||||||||||
Sbjct: 62 tcaccggttggaaactggtacgggtccccgagtcag 97
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 ctgacgaggggaaccgtgctggtttcgacctc 32
||||||| || |||||||||||||||||||||
Sbjct: 7 ctgacgacggaaaccgtgctggtttcgacctc 38
>RF00685;mir-36;ABLE02007319.1/2630-2733 281687:Caenorhabditis
japonica
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 60 ctatcaccgggtggaaactggtacgggtccccga 93
||||||||||||||||||| | |||||||||||
Sbjct: 64 ctatcaccgggtggaaactagctcgggtccccga 97
