miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00685;mir-36;AAGD02000354.1/140673-140569 31234:Caenorhabditis
remanei
Length = 105
Score = 208 bits (105), Expect = 1e-53
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 7 cttcaaaccctgcccgtaacctagttgatgttcatcgcagtgatatgacgcatcagtaca 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttcaaaccctgcccgtaacctagttgatgttcatcgcagtgatatgacgcatcagtaca 60
Query: 67 ttccttatcaccgggtgtacatcagctagggtgcgggttcaggtt 111
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttccttatcaccgggtgtacatcagctagggtgcgggttcaggtt 105
>RF00685;mir-36;AC084525.1/3341-3446 6238:Caenorhabditis briggsae
Length = 106
Score = 63.9 bits (32), Expect = 4e-10
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 37 ttcatcgcagtgatatgacgca-tcagtacattccttatcaccgggtgtacatcagctag 95
|||||||||||||||||||||| ||| |||| ||||||||||||||| |||||||||
Sbjct: 31 ttcatcgcagtgatatgacgcattcaaaccatttcttatcaccgggtgtcaatcagctag 90
Query: 96 ggtg 99
||||
Sbjct: 91 ggtg 94
>RF00685;mir-36;AL110499.1/17413-17508 6239:Caenorhabditis elegans
Length = 96
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 72 tatcaccgggtgtacatcagctagggtgcgggttcaggt 110
||||||||||||||||||||||| ||||||||| |||||
Sbjct: 57 tatcaccgggtgtacatcagctaaggtgcgggtacaggt 95
