miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00795;mir-43;AAGD02000348.1/78685-78788 31234:Caenorhabditis
remanei
Length = 104
Score = 198 bits (100), Expect = 9e-51
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 aggcgattctgcccgtgacaacaagaaacttgtgattatgcctagagaatgaagaaggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 aggcgattctgcccgtgacaacaagaaacttgtgattatgcctagagaatgaagaaggga 64
Query: 61 catatcacagtttacttgctgtcgcaggcggtgtcatctg 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 catatcacagtttacttgctgtcgcaggcggtgtcatctg 104
>RF00795;mir-43;CAAC02000450.1/2292316-2292219 6238:Caenorhabditis
briggsae
Length = 98
Score = 77.8 bits (39), Expect = 2e-14
Identities = 79/91 (86%), Gaps = 6/91 (6%)
Strand = Plus / Plus
Query: 1 aggcgattctgcccgtgacaacaagaaacttgtgattatgcctagagaatgaagaaggga 60
|||||||||||||||||||| ||||| ||||||||||||| || |||| | |||
Sbjct: 4 aggcgattctgcccgtgacatcaagatgcttgtgattatgc---gaaaatgttg---gga 57
Query: 61 catatcacagtttacttgctgtcgcaggcgg 91
|||||||||||||||||||||||||||||||
Sbjct: 58 catatcacagtttacttgctgtcgcaggcgg 88
>RF00795;mir-43;Z70213.1/12528-12626 6239:Caenorhabditis elegans
Length = 99
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 56 agggacatatcacagtttacttgctgtcgcaggcggtg 93
|||||||||||||||||||||||||||||| |||||||
Sbjct: 54 agggacatatcacagtttacttgctgtcgcgggcggtg 91
>RF00795;mir-43;ABEG01018919.1/5966-5860 135651:Caenorhabditis
brenneri
Length = 107
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 59 gacatatcacagtttacttgctgtcgcaggc 89
|||||||||||||||||||||||||||||||
Sbjct: 65 gacatatcacagtttacttgctgtcgcaggc 95
>RF00795;mir-43;ABLE02021980.1/2423-2327 281687:Caenorhabditis
japonica
Length = 97
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 catatcacagtttacttgctgtc 83
|||||||||||||||||||||||
Sbjct: 60 catatcacagtttacttgctgtc 82
