miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00249;mir-46;ABEG01013767.1/31821-31746 135651:Caenorhabditis
brenneri
Length = 76
Score = 89.7 bits (45), Expect = 7e-18
Identities = 69/76 (90%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 21 agctgaagagagccgtctattgacagttcgtttctat--acttatgtactgtcatggagt 78
||||||||||||||||||||||||||||||| ||| | | | | |||||||||||||||
Sbjct: 1 agctgaagagagccgtctattgacagttcgtctctgttcagtcaggtactgtcatggagt 60
Query: 79 cgctctcttcagatga 94
||||||||||||||||
Sbjct: 61 cgctctcttcagatga 76
>RF00249;mir-46;Z82094.1/4737-4814 6239:Caenorhabditis elegans
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 21 agctgaagagagccgtctattgacagttc 49
|||||||||||||||||||||||||||||
Sbjct: 1 agctgaagagagccgtctattgacagttc 29
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 67 ctgtcatggagtcgctctcttcagatga 94
||||||||||||||||||||||||||||
Sbjct: 51 ctgtcatggagtcgctctcttcagatga 78
>RF00249;mir-46;ABLE02008754.1/1796-1721 281687:Caenorhabditis
japonica
Length = 76
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 67 ctgtcatggagtcgctctcttcagatga 94
||||||||||||||||||||||||||||
Sbjct: 49 ctgtcatggagtcgctctcttcagatga 76
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 21 agctgaagagagccgtctattgacagttcgt 51
||||||||||||||||| ||||||||||||
Sbjct: 1 agctgaagagagccgtcctttgacagttcgt 31
>RF00249;mir-46;Z69663.1/519-592 6239:Caenorhabditis elegans
Length = 74
Score = 56.0 bits (28), Expect = 1e-07
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 23 ctgaagagagccgtctattgacagttcgtttctatacttatgtactgtcatggagtcgct 82
||||||||||| ||||||||||||| ||| || | | | ||||||||||||| ||||
Sbjct: 3 ctgaagagagcagtctattgacagtcggttactcgaaatctttactgtcatggaggcgct 62
Query: 83 ctcttcagatga 94
||||||||||||
Sbjct: 63 ctcttcagatga 74
>RF00249;mir-46;ABEG01019121.1/8208-8137 135651:Caenorhabditis
brenneri
Length = 72
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 65 tactgtcatggagtcgctctcttcagatga 94
||||||||||||| ||||||||||||||||
Sbjct: 43 tactgtcatggaggcgctctcttcagatga 72
>RF00249;mir-46;ABLE02002405.1/9341-9413 281687:Caenorhabditis
japonica
Length = 73
Score = 52.0 bits (26), Expect = 2e-06
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 21 agctgaagagagccgtctattgacagttcgtttctatacttatgtactgtcatggagtcg 80
||||||||||||| |||||||||||||| ||| ||| | | |||||||||||| ||
Sbjct: 1 agctgaagagagcagtctattgacagttggtt-ctactccaactcactgtcatggaggcg 59
Query: 81 ctctcttcagatga 94
||||||||||||||
Sbjct: 60 ctctcttcagatga 73
>RF00249;mir-46;ABKE01004910.1/3903-3980 54126:Pristionchus
pacificus
Length = 78
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 tgtcatggagtcgctctcttcag 90
|||||||||||||||||||||||
Sbjct: 52 tgtcatggagtcgctctcttcag 74
>RF00249;mir-46;AAGD02008041.1/22073-22144 31234:Caenorhabditis
remanei
Length = 72
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tactgtcatggagtcgctctcttcag 90
||||||||||||| ||||||||||||
Sbjct: 43 tactgtcatggaggcgctctcttcag 68
>RF00249;mir-46;ABJB010980769.1/513-586 6945:Ixodes scapularis
(black-legged tick)
Length = 74
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 actgtcatggagtcgctctctt 87
||||||||||||||||||||||
Sbjct: 46 actgtcatggagtcgctctctt 67
