miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00249;mir-46;AAGD02008041.1/22073-22144 31234:Caenorhabditis
remanei
Length = 72
Score = 143 bits (72), Expect = 5e-34
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 17 gactgaagagagcattctgttgacagttcgattccgaactcctactgtcatggaggcgct 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gactgaagagagcattctgttgacagttcgattccgaactcctactgtcatggaggcgct 60
Query: 77 ctcttcaggtga 88
||||||||||||
Sbjct: 61 ctcttcaggtga 72
>RF00249;mir-46;ABEG01019121.1/8208-8137 135651:Caenorhabditis
brenneri
Length = 72
Score = 83.8 bits (42), Expect = 4e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 19 ctgaagagagcattctgttgacagttcgattccgaactcctactgtcatggaggcgctct 78
|||||| |||| ||||| ||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 3 ctgaagggagctttctggtgacagttcgattttgaactcttactgtcatggaggcgctct 62
Query: 79 cttcag 84
||||||
Sbjct: 63 cttcag 68
>RF00249;mir-46;Z69663.1/519-592 6239:Caenorhabditis elegans
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 tactgtcatggaggcgctctcttcag 84
||||||||||||||||||||||||||
Sbjct: 45 tactgtcatggaggcgctctcttcag 70
>RF00249;mir-46;ABLE02002405.1/9341-9413 281687:Caenorhabditis
japonica
Length = 73
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 actgtcatggaggcgctctcttcag 84
|||||||||||||||||||||||||
Sbjct: 45 actgtcatggaggcgctctcttcag 69
>RF00249;mir-46;ABEG01013767.1/31821-31746 135651:Caenorhabditis
brenneri
Length = 76
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 tactgtcatggaggcgctctcttcag 84
||||||||||||| ||||||||||||
Sbjct: 47 tactgtcatggagtcgctctcttcag 72
