miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00796;mir-48;AAGD02012077.1/7529-7641 31234:Caenorhabditis
remanei
Length = 113
Score = 186 bits (94), Expect = 3e-47
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 cataccggatgttgaggtaggctcagtagatgcgatcagagttgtgcctcaggcgttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cataccggatgttgaggtaggctcagtagatgcgatcagagttgtgcctcaggcgttcct 65
Query: 61 cacatcttcttgcctaactcgccttcctttatgt 94
||||||||||||||||||||||||||||||||||
Sbjct: 66 cacatcttcttgcctaactcgccttcctttatgt 99
>RF00796;mir-48;CAAC02000462.1/389258-389362 6238:Caenorhabditis
briggsae
Length = 105
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 7 ggatgttgaggtaggctcagtagatgcga 35
|||||||||||||||||||||||||||||
Sbjct: 12 ggatgttgaggtaggctcagtagatgcga 40
>RF00796;mir-48;ABEG01002557.1/9280-9167 135651:Caenorhabditis
brenneri
Length = 114
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 gttgaggtaggctcagtagatgcga 35
|||||||||||||||||||||||||
Sbjct: 16 gttgaggtaggctcagtagatgcga 40
>RF00796;mir-48;Z81551.1/5922-5825 6239:Caenorhabditis elegans
Length = 98
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 ttgaggtaggctcagtagatgcga 35
||||||||||||||||||||||||
Sbjct: 15 ttgaggtaggctcagtagatgcga 38
