miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00824;mir-50;AAGD02001051.1/27617-27516 31234:Caenorhabditis
remanei
Length = 102
Score = 190 bits (96), Expect = 2e-48
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 cccaccccctggccgctgatatgtctggtattcttgggttcgatactctgaaaaacgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cccaccccctggccgctgatatgtctggtattcttgggttcgatactctgaaaaacgaac 61
Query: 61 caaagtagcagacgtatcgacggccgggagggtggg 96
||||||||||||||||||||||||||||||||||||
Sbjct: 62 caaagtagcagacgtatcgacggccgggagggtggg 97
>RF00824;mir-50;ABEG01020864.1/20176-20077 135651:Caenorhabditis
brenneri
Length = 100
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 11 ggccgctgatatgtctggtattcttgggttc 41
|||||||||||||||||||||||||||||||
Sbjct: 12 ggccgctgatatgtctggtattcttgggttc 42
>RF00824;mir-50;AC025726.2/98206-98306 6239:Caenorhabditis elegans
Length = 101
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 11 ggccgctgatatgtctggtattcttgggtt 40
||||||||||||||||||||||||||||||
Sbjct: 12 ggccgctgatatgtctggtattcttgggtt 41
>RF00824;mir-50;CAAC02000589.1/893157-893260 6238:Caenorhabditis
briggsae
Length = 104
Score = 54.0 bits (27), Expect = 3e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 2 ccaccccctggccgctgatatgtctggtattcttgggtt 40
|||||| | ||||||||||||||||| ||||||||||||
Sbjct: 3 ccacccaccggccgctgatatgtctgatattcttgggtt 41
