miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00734;mir-52;AAGD02004810.1/56-151 31234:Caenorhabditis remanei
Length = 96
Score = 182 bits (92), Expect = 5e-46
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 2 accctctactaccgtccacccgtacatatgtttccgtgcttgacattgtgctcaatcacg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accctctactaccgtccacccgtacatatgtttccgtgcttgacattgtgctcaatcacg 60
Query: 62 ttacaatatatgggtcgccggtcttaggcggt 93
||||||||||||||||||||||||||||||||
Sbjct: 61 ttacaatatatgggtcgccggtcttaggcggt 92
>RF00734;mir-52;ABEG01011618.1/15024-14927 135651:Caenorhabditis
brenneri
Length = 98
Score = 99.6 bits (50), Expect = 6e-21
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 15 gtccacccgtacatatgtttccgtgcttgacattgtgctcaatcacgttacaatatatgg 74
|||||||||||||||||||||||||||||||| || | |||||||||| ||||| |||||
Sbjct: 14 gtccacccgtacatatgtttccgtgcttgacaatgagttcaatcacgtcacaatttatgg 73
Query: 75 gtcgccggtc 84
||||||||||
Sbjct: 74 gtcgccggtc 83
>RF00734;mir-52;CAAC02000470.1/1061940-1062037 6238:Caenorhabditis
briggsae
Length = 98
Score = 83.8 bits (42), Expect = 4e-16
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 15 gtccacccgtacatatgtttccgtgcttgacattgtgctcaatcacgttacaat 68
||||||||||||||||||||||||||||||||| | ||||||||||| ||||||
Sbjct: 14 gtccacccgtacatatgtttccgtgcttgacatagagctcaatcacgatacaat 67
>RF00734;mir-52;AL023835.1/60854-60953 6239:Caenorhabditis elegans
Length = 100
Score = 69.9 bits (35), Expect = 5e-12
Identities = 51/55 (92%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 15 gtccacccgtacatatgtttccgtgcttgacattg-tgctcaatcacgttacaat 68
|||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 14 gtccacccgtacatatgtttccgtgcttgacagcgaagctcaatcacgttacaat 68
>RF00734;mir-52;Z68760.3/4495-4396 6239:Caenorhabditis elegans
Length = 100
Score = 61.9 bits (31), Expect = 1e-09
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 15 gtccacccgtacatatgtttccgtgcttgacat-tgtgctcaatcacgttacaatatatg 73
|||||||||||||| |||||||||||||||| | ||||||||||| ||||||||||
Sbjct: 14 gtccacccgtacatttgtttccgtgcttgacttcaaagctcaatcacggcacaatatatg 73
Query: 74 ggtcgcc 80
|||||||
Sbjct: 74 ggtcgcc 80
