miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;AAGD02001072.1/97510-97436 31234:Caenorhabditis
remanei
Length = 75
Score = 149 bits (75), Expect = 9e-36
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 25 tttcgtctaccctgtagatcgagctgtgtgttttgaagtgttcatacacaagctagactg 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttcgtctaccctgtagatcgagctgtgtgttttgaagtgttcatacacaagctagactg 60
Query: 85 caaggtgaacgacaa 99
|||||||||||||||
Sbjct: 61 caaggtgaacgacaa 75
>RF00104;mir-10;CAAC02000450.1/11231-11158 6238:Caenorhabditis
briggsae
Length = 74
Score = 85.7 bits (43), Expect = 1e-16
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 26 ttcgtctaccctgtagatcgagctgtgtgttttgaagtgttcatacacaagctagactgc 85
||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||| |
Sbjct: 2 ttcgtctaccctgtagatcgagctgtgtgttctgaagt-atcatacacgagctagactac 60
Query: 86 aaggtgaacga 96
||||||||||
Sbjct: 61 taggtgaacga 71
>RF00104;mir-10;ABEG01006274.1/3492-3418 135651:Caenorhabditis
brenneri
Length = 75
Score = 71.9 bits (36), Expect = 2e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 26 ttcgtctaccctgtagatcgagctgtgtgttttgaagtgttcatacacaagctagactgc 85
|||||||||||||||||| ||||||||||||| ||| | ||||||||||||||| |
Sbjct: 2 ttcgtctaccctgtagatagagctgtgtgtttggaatataccgtacacaagctagactac 61
Query: 86 aaggtgaacgac 97
||||||||||||
Sbjct: 62 aaggtgaacgac 73
>RF00104;mir-10;Z36753.1/18689-18616 6239:Caenorhabditis elegans
Length = 74
Score = 67.9 bits (34), Expect = 3e-11
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 27 tcgtctaccctgtagatcgagctgtgtgttttgaagtgttcatacacaagctagactgca 86
|||||||||||||||||||||||||||| |||||| |||||||| ||||||||| ||
Sbjct: 3 tcgtctaccctgtagatcgagctgtgtg-tttgaaacaatcatacacgagctagactaca 61
Query: 87 aggtgaacga 96
||||| ||||
Sbjct: 62 aggtgcacga 71
>RF00104;mir-10;ABLE02004203.1/1142-1061 281687:Caenorhabditis
japonica
Length = 82
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 27 tcgtctaccctgtagatcgagctgtgtgt 55
|||||||||||||||||||||||||||||
Sbjct: 3 tcgtctaccctgtagatcgagctgtgtgt 31
