miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00848;mir-61;AAGD02011065.1/159499-159413 31234:Caenorhabditis
remanei
Length = 87
Score = 172 bits (87), Expect = 5e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 7 tatcggtcttccgagttgggtcacggcgcttagtccttccgacatatggcaatgactaga 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatcggtcttccgagttgggtcacggcgcttagtccttccgacatatggcaatgactaga 60
Query: 67 accttggctcagctcgggactccgatg 93
|||||||||||||||||||||||||||
Sbjct: 61 accttggctcagctcgggactccgatg 87
>RF00848;mir-61;ABEG01010693.1/18858-18944 135651:Caenorhabditis
brenneri
Length = 87
Score = 65.9 bits (33), Expect = 9e-11
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 18 cgagttgggtcacggcgcttagtccttccgacatatggcaatgactagaaccttggctca 77
||||||||||||||| ||||||||||||| ||| || ||||||||||||| || ||||
Sbjct: 13 cgagttgggtcacggtgcttagtccttccaacagtcggtaatgactagaaccgtgactca 72
Query: 78 gctcg 82
|||||
Sbjct: 73 gctcg 77
>RF00848;mir-61;Z72511.1/6725-6637 6239:Caenorhabditis elegans
Length = 89
Score = 56.0 bits (28), Expect = 9e-08
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 18 cgagttgggtcacggcgcttagtccttccgacatatggcaatgactagaacc 69
|||| ||||| |||| ||||||||||||| | |||||||||||||||||||
Sbjct: 14 cgagatgggttacggggcttagtccttcctccgtatggcaatgactagaacc 65
>RF00848;mir-61;CAAC02000606.1/999667-999581 6238:Caenorhabditis
briggsae
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 37 tagtccttccgacatatggcaatgactagaaccttggctcagctcg 82
||||||||||| ||||| |||||||||||||||| ||| |||||
Sbjct: 31 tagtccttccggtgtatggtaatgactagaaccttgactctgctcg 76
