miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00844;mir-67;AAGD02001338.1/23885-23949 31234:Caenorhabditis
remanei
Length = 65
Score = 129 bits (65), Expect = 7e-30
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 15 aactcgttctgctggttgttatgctgaaacagaaagaagcatcacaacctcctagaaaga 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aactcgttctgctggttgttatgctgaaacagaaagaagcatcacaacctcctagaaaga 60
Query: 75 gtaga 79
|||||
Sbjct: 61 gtaga 65
>RF00844;mir-67;ABLE02024385.1/759-693 281687:Caenorhabditis
japonica
Length = 67
Score = 58.0 bits (29), Expect = 2e-08
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 17 ctcgttctgctggttgttatgctgaaac-aga-aagaagcatcacaacctcctagaaaga 74
||||||||| |||||||||||| || | ||| ||||||||||||||||||| |||||||
Sbjct: 3 ctcgttctgatggttgttatgccgatccgagagaagaagcatcacaacctccaagaaaga 62
Query: 75 gtaga 79
|||||
Sbjct: 63 gtaga 67
>RF00844;mir-67;U41266.2/4475-4411 6239:Caenorhabditis elegans
Length = 65
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 51 aagcatcacaacctcctagaaagagtaga 79
|||||||||||||||||||||||||||||
Sbjct: 37 aagcatcacaacctcctagaaagagtaga 65
>RF00844;mir-67;CAAC02000485.1/290134-290201 6238:Caenorhabditis
briggsae
Length = 68
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 51 aagcatcacaacctcctagaaagagtaga 79
|||||||||||||||||||||||||||||
Sbjct: 40 aagcatcacaacctcctagaaagagtaga 68
>RF00844;mir-67;ABEG01000173.1/33273-33206 135651:Caenorhabditis
brenneri
Length = 68
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 aagcatcacaacctcctagaaagagt 76
||||||||||||||||||||||||||
Sbjct: 40 aagcatcacaacctcctagaaagagt 65
