miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00817;mir-80;AAGD02008136.1/2438-2337 31234:Caenorhabditis
remanei
Length = 102
Score = 198 bits (100), Expect = 9e-51
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 ggacactctttcgctcagctttcgacatgattctaaacaatacgtcgagacaatgttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ggacactctttcgctcagctttcgacatgattctaaacaatacgtcgagacaatgttgtt 62
Query: 61 gagatcattagttgaaagccgaacgattttgagatatcca 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 gagatcattagttgaaagccgaacgattttgagatatcca 102
>RF00817;mir-80;Z22175.1/1056-957 6239:Caenorhabditis elegans
Length = 100
Score = 101 bits (51), Expect = 2e-21
Identities = 76/83 (91%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 1 ggacactctttcgctcagctttcgacatgattctaaacaatacgtcgagacaatgttgtt 60
|||||||| ||||||||||||||||||||||||| |||||| || | || | ||||||||
Sbjct: 3 ggacactcgttcgctcagctttcgacatgattctgaacaatccg-caagcccatgttgtt 61
Query: 61 gagatcattagttgaaagccgaa 83
|||||||||||||||||||||||
Sbjct: 62 gagatcattagttgaaagccgaa 84
>RF00817;mir-80;ABLE02016062.1/2993-2893 281687:Caenorhabditis
japonica
Length = 101
Score = 75.8 bits (38), Expect = 9e-14
Identities = 75/86 (87%), Gaps = 6/86 (6%)
Strand = Plus / Plus
Query: 6 ctctttcgctcagctttcgacatgattctaaacaatacgtcgagaca---atgttgttga 62
|||| |||||||||||||||||||||||| |||||| || | ||| ||||||||||
Sbjct: 8 ctctgtcgctcagctttcgacatgattctgaacaat---tccacacatttatgttgttga 64
Query: 63 gatcattagttgaaagccgaacgatt 88
||||||||||||||||||||| ||||
Sbjct: 65 gatcattagttgaaagccgaatgatt 90
