miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00728;mir-81;AAGD02002337.1/178830-178730 31234:Caenorhabditis
remanei
Length = 101
Score = 186 bits (94), Expect = 3e-47
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 cctcgtggccagcagtcggttttcaccttgatctgagagctaaacataatgcttatctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cctcgtggccagcagtcggttttcaccttgatctgagagctaaacataatgcttatctga 65
Query: 61 gatcatcgtgaaagctagttgcaggtacacaggc 94
||||||||||||||||||||||||||||||||||
Sbjct: 66 gatcatcgtgaaagctagttgcaggtacacaggc 99
>RF00728;mir-81;CAAC02000448.1/1314112-1314010 6238:Caenorhabditis
briggsae
Length = 103
Score = 99.6 bits (50), Expect = 6e-21
Identities = 65/69 (94%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 15 gtcggttttcaccttgatctgagagc--taaacataatgcttatctgagatcatcgtgaa 72
|||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct: 20 gtcggttttcaccttgatctgagagcaataaccagaatgcttatctgagatcatcgtgaa 79
Query: 73 agctagttg 81
|||||||||
Sbjct: 80 agctagttg 88
>RF00728;mir-81;ABEG01000824.1/7077-6979 135651:Caenorhabditis
brenneri
Length = 99
Score = 83.8 bits (42), Expect = 4e-16
Identities = 71/78 (91%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 4 cgtggccagcagtcggttttcaccttgatctgagagctaaacataatgcttatctgagat 63
||||| || ||||||||||||||||||||||||||||| | | ||||| ||||||||||
Sbjct: 9 cgtggtcaacagtcggttttcaccttgatctgagagct-atctgaatgc-tatctgagat 66
Query: 64 catcgtgaaagctagttg 81
||||||||||||||||||
Sbjct: 67 catcgtgaaagctagttg 84
>RF00728;mir-81;U41531.2/14198-14299 6239:Caenorhabditis elegans
Length = 102
Score = 79.8 bits (40), Expect = 6e-15
Identities = 71/80 (88%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 3 tcgtggccagcagtcggttttcaccttgatctgagagctaaac-ataatgcttatctgag 61
||||| ||| ||||||||||||||| |||||||||||| | | | ||||||| ||||||
Sbjct: 8 tcgtgcccaacagtcggttttcaccgtgatctgagagcaatccaaaaatgcttttctgag 67
Query: 62 atcatcgtgaaagctagttg 81
||||||||||||||||||||
Sbjct: 68 atcatcgtgaaagctagttg 87
>RF00728;mir-81;ABLE02006266.1/6774-6872 281687:Caenorhabditis
japonica
Length = 99
Score = 58.0 bits (29), Expect = 2e-08
Identities = 61/69 (88%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 13 cagtcggttttcaccttgatctgagagctaaacataatgcttatctgagatcatcgtgaa 72
|||||||||||| | |||||||||||||||| || ||| ||||||||||||||||||
Sbjct: 18 cagtcggttttcccattgatctgagagctaactgtac-gct-atctgagatcatcgtgaa 75
Query: 73 agctagttg 81
|||||||||
Sbjct: 76 agctagttg 84
>RF00728;mir-81;CAAC02000448.1/1311085-1311186 6238:Caenorhabditis
briggsae
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 atctgagatcatcgtgaaagctagttgc 82
||||||||||||||||||||| ||||||
Sbjct: 61 atctgagatcatcgtgaaagccagttgc 88
>RF00728;mir-81;ABEG01000824.1/4017-4115 135651:Caenorhabditis
brenneri
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 atctgagatcatcgtgaaagctagttgc 82
||||||||||||||||||||| ||||||
Sbjct: 58 atctgagatcatcgtgaaagccagttgc 85
>RF00728;mir-81;ABLE02006267.1/2400-2303 281687:Caenorhabditis
japonica
Length = 98
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 56 tctgagatcatcgtgaaagctagttgc 82
|||||||||||||||||||| ||||||
Sbjct: 58 tctgagatcatcgtgaaagccagttgc 84
>RF00728;mir-81;AAGD02002337.1/175857-175956 31234:Caenorhabditis
remanei
Length = 100
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 atctgagatcatcgtgaaagctagttg 81
||||||||||||||||||||| |||||
Sbjct: 59 atctgagatcatcgtgaaagccagttg 85
>RF00728;mir-81;ABKE01000013.1/87658-87562 54126:Pristionchus
pacificus
Length = 97
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 cggttttcaccttgatctgagagctaa 43
|||||||||| ||||||||||||||||
Sbjct: 22 cggttttcacgttgatctgagagctaa 48
>RF00728;mir-81;U41531.2/18477-18379 6239:Caenorhabditis elegans
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 tctgagatcatcgtgaaagctagttg 81
|||||||||||||||||||| |||||
Sbjct: 59 tctgagatcatcgtgaaagccagttg 84
