miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00728;mir-81;AAGD02002337.1/175857-175956 31234:Caenorhabditis
remanei
Length = 100
Score = 182 bits (92), Expect = 5e-46
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 aagttcttctagcgacaggttttccctgtgatctgcagagtacaaagaaatacatctgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 aagttcttctagcgacaggttttccctgtgatctgcagagtacaaagaaatacatctgag 65
Query: 61 atcatcgtgaaagccagttgtttccaagaact 92
||||||||||||||||||||||||||||||||
Sbjct: 66 atcatcgtgaaagccagttgtttccaagaact 97
>RF00728;mir-81;CAAC02000448.1/1311085-1311186 6238:Caenorhabditis
briggsae
Length = 102
Score = 93.7 bits (47), Expect = 4e-19
Identities = 74/82 (90%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 1 aagttcttctagcgacaggttttccctgtgatctgcagagtacaaaga--aatacatctg 58
|||||||||||||||||||||||| | |||||||||||||| | | || || |||||||
Sbjct: 6 aagttcttctagcgacaggttttcgccgtgatctgcagagttccatgaagaaaacatctg 65
Query: 59 agatcatcgtgaaagccagttg 80
||||||||||||||||||||||
Sbjct: 66 agatcatcgtgaaagccagttg 87
>RF00728;mir-81;ABEG01000824.1/4017-4115 135651:Caenorhabditis
brenneri
Length = 99
Score = 83.8 bits (42), Expect = 4e-16
Identities = 70/78 (89%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 3 gttcttctagcgacaggttttccctgtgatctgcagagtacaaagaaatacatctgagat 62
||||| ||||| ||||||| || ||||||||||||||||| |||| ||||||||||||
Sbjct: 8 gttctcctagcaacaggttctcactgtgatctgcagagtataaagcc-tacatctgagat 66
Query: 63 catcgtgaaagccagttg 80
||||||||||||||||||
Sbjct: 67 catcgtgaaagccagttg 84
>RF00728;mir-81;U41531.2/18477-18379 6239:Caenorhabditis elegans
Length = 99
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 55 tctgagatcatcgtgaaagccagttgttt 83
|||||||||||||||||||||||||||||
Sbjct: 59 tctgagatcatcgtgaaagccagttgttt 87
>RF00728;mir-81;ABLE02006267.1/2400-2303 281687:Caenorhabditis
japonica
Length = 98
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 50 atacatctgagatcatcgtgaaagccagttg 80
|||| ||||||||||||||||||||||||||
Sbjct: 53 atacttctgagatcatcgtgaaagccagttg 83
>RF00728;mir-81;CAAC02000448.1/1314112-1314010 6238:Caenorhabditis
briggsae
Length = 103
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 54 atctgagatcatcgtgaaagccagttgtt 82
||||||||||||||||||||| |||||||
Sbjct: 62 atctgagatcatcgtgaaagctagttgtt 90
>RF00728;mir-81;ABEG01000824.1/7077-6979 135651:Caenorhabditis
brenneri
Length = 99
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 54 atctgagatcatcgtgaaagccagttgtt 82
||||||||||||||||||||| |||||||
Sbjct: 58 atctgagatcatcgtgaaagctagttgtt 86
>RF00728;mir-81;ABLE02006266.1/6774-6872 281687:Caenorhabditis
japonica
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 54 atctgagatcatcgtgaaagccagttgt 81
||||||||||||||||||||| ||||||
Sbjct: 58 atctgagatcatcgtgaaagctagttgt 85
>RF00728;mir-81;U41531.2/14198-14299 6239:Caenorhabditis elegans
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 55 tctgagatcatcgtgaaagccagttgtt 82
|||||||||||||||||||| |||||||
Sbjct: 62 tctgagatcatcgtgaaagctagttgtt 89
>RF00728;mir-81;AAGD02002337.1/178830-178730 31234:Caenorhabditis
remanei
Length = 101
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 54 atctgagatcatcgtgaaagccagttg 80
||||||||||||||||||||| |||||
Sbjct: 60 atctgagatcatcgtgaaagctagttg 86
