miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00812;mir-83;CAAC02000544.1/241286-241176 6238:Caenorhabditis
briggsae
Length = 111
Score = 135 bits (68), Expect = 1e-31
Identities = 89/96 (92%)
Strand = Plus / Plus
Query: 1 aggcaccactcggaaaaactgagtttatgtgtgtacttgacggccactcgagcaacgatc 60
|||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 6 aggcaccactcgaaaaaactgagtttatgtgtgtacttgacggcgatcagagcaacgatc 65
Query: 61 tagcaccatataaattcagtattttcgtggagagag 96
|||||||||||||||||||| |||||||||| ||||
Sbjct: 66 tagcaccatataaattcagtgttttcgtggacagag 101
>RF00812;mir-83;ABEG01004581.1/14903-14793 135651:Caenorhabditis
brenneri
Length = 111
Score = 135 bits (68), Expect = 1e-31
Identities = 87/92 (94%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 1 aggcaccactcggaaaaactgagtttatgtgtgtactt-gacggccactcgagcaacgat 59
|||||||||||||||||||||||||||| || |||||| |||||||| | ||||||||||
Sbjct: 6 aggcaccactcggaaaaactgagtttatttgagtacttagacggccattagagcaacgat 65
Query: 60 ctagcaccatataaattcagtattttcgtgga 91
||||||||||||||||||||||||||||||||
Sbjct: 66 ctagcaccatataaattcagtattttcgtgga 97
>RF00812;mir-83;ABLE02009752.1/5305-5197 281687:Caenorhabditis
japonica
Length = 109
Score = 101 bits (51), Expect = 2e-21
Identities = 67/71 (94%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 18 actgagtttatgtgtgtacttgacggcca-ctcgagcaacgatctagcaccatataaatt 76
|||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 22 actgagtttacgtgtgtgcttgacggccttctcgagcaacgatctagcaccatataaatt 81
Query: 77 cagtattttcg 87
|||||||||||
Sbjct: 82 cagtattttcg 92
>RF00812;mir-83;U41012.1/15999-16108 6239:Caenorhabditis elegans
Length = 110
Score = 99.6 bits (50), Expect = 6e-21
Identities = 78/86 (90%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 3 gcaccactcggaaaaactgagtttatgtgtgtacttgacggcc-actcgagcaacgatct 61
||||||||||||| ||||| |||||||||||||||||||||| || ||||| ||||||
Sbjct: 8 gcaccactcggaaccactgaatttatgtgtgtacttgacggccaacaagagcatcgatct 67
Query: 62 agcaccatataaattcagtattttcg 87
|||||||||||||||||||| |||||
Sbjct: 68 agcaccatataaattcagtaatttcg 93
