miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00810;mir-85;AAGD02000337.1/3974-4079 31234:Caenorhabditis
remanei
Length = 106
Score = 208 bits (105), Expect = 1e-53
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 2 gaagacgttctgaagtcggagcccgtctttccaatattttgaaaccagtactcatgcaaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagacgttctgaagtcggagcccgtctttccaatattttgaaaccagtactcatgcaaa 60
Query: 62 tggttacaaagtattcgaaaaggcgtgctctgagaagagctcttc 106
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggttacaaagtattcgaaaaggcgtgctctgagaagagctcttc 105
>RF00810;mir-85;Z66520.1/16076-16181 6239:Caenorhabditis elegans
Length = 106
Score = 61.9 bits (31), Expect = 2e-09
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 16 gtcggagcccgtctttccaatattttgaaaccagtactcatgcaaatggttacaaagtat 75
||||||||||| ||| ||||| |||||||||||| || |||||||||||||||||
Sbjct: 15 gtcggagcccgatttttcaatagtttgaaaccagtgtacacataaatggttacaaagtat 74
Query: 76 tcgaaaaggcgtgctctga 94
| |||||| ||||||||||
Sbjct: 75 ttgaaaagtcgtgctctga 93
>RF00810;mir-85;ABEG01005683.1/20918-20813 135651:Caenorhabditis
brenneri
Length = 106
Score = 56.0 bits (28), Expect = 9e-08
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 22 gcccgtctttccaatattttgaaaccagtactcatgcaaatggttacaaagtattcgaaa 81
||||| |||| |||||||||||||||||| | || ||||||||||||||||| ||||
Sbjct: 21 gcccgacttttcaatattttgaaaccagttattctgagaatggttacaaagtatttgaaa 80
Query: 82 aggcgtgc 89
|| |||||
Sbjct: 81 agccgtgc 88
>RF00810;mir-85;CAAC02000442.1/497969-497866 6238:Caenorhabditis
briggsae
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 62 tggttacaaagtattcgaaaaggcgtgc 89
||||||||||||||| ||||||||||||
Sbjct: 59 tggttacaaagtatttgaaaaggcgtgc 86
>RF00810;mir-85;ABLE02009413.1/1504-1612 281687:Caenorhabditis
japonica
Length = 109
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 62 tggttacaaagtattcgaaaaggcgtgctctg 93
||||||||||||||| |||||| |||||||||
Sbjct: 64 tggttacaaagtatttgaaaagtcgtgctctg 95
