miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00808;mir-86;AAGD02000059.1/34982-35079 31234:Caenorhabditis
remanei
Length = 98
Score = 194 bits (98), Expect = 1e-49
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 2 cgagtcggcgccgtctaagtgaatgctttgccacagtcttcgaccatgtcaaatgaagcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgagtcggcgccgtctaagtgaatgctttgccacagtcttcgaccatgtcaaatgaagcc 60
Query: 62 tgggctaagattcgcttaggccggcgtttttcgacacg 99
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgggctaagattcgcttaggccggcgtttttcgacacg 98
>RF00808;mir-86;CAAC02000515.1/635706-635609 6238:Caenorhabditis
briggsae
Length = 98
Score = 117 bits (59), Expect = 3e-26
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 11 gccgtctaagtgaatgctttgccacagtcttcgaccatgtcaaatgaagcctgggctaag 70
||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||| ||
Sbjct: 10 gccgtttaagtgaatgctttgccacagtcttcgatcatgtcacatgaagcctgggcttag 69
Query: 71 attcgcttaggccggcgtt 89
|||| ||||||||||||||
Sbjct: 70 attcacttaggccggcgtt 88
>RF00808;mir-86;AL132860.1/102935-102841 6239:Caenorhabditis
elegans
Length = 95
Score = 105 bits (53), Expect = 1e-22
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 10 cgccgtctaagtgaatgctttgccacagtcttcgaccatgtcaaatgaagcctgggctaa 69
||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |
Sbjct: 9 cgccgtctaagtgaatgctttgccacagtcttcgatgttctgaaatgaagcctgggctca 68
Query: 70 gattcgcttaggccggcgttt 90
|||||||||||||||| ||||
Sbjct: 69 gattcgcttaggccggagttt 89
>RF00808;mir-86;ABLE02016789.1/3211-3313 281687:Caenorhabditis
japonica
Length = 103
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 6 tcggcgccgtctaagtgaatgctttgccacagtcttc 42
|||| |||| |||||||||||||||||||||||||||
Sbjct: 5 tcggtgccggctaagtgaatgctttgccacagtcttc 41
>RF00808;mir-86;AAQA01000542.1/5785-5693 6279:Brugia malayi
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 taagtgaatgctttgccacagtctt 41
|||||||||||||||||||||||||
Sbjct: 16 taagtgaatgctttgccacagtctt 40
