miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00785;mir-90;AAGD02006260.1/1037-942 31234:Caenorhabditis remanei
Length = 96
Score = 190 bits (96), Expect = 3e-48
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 6 gggcctcacttcgagcggtattcaacgactatctcaaccgatatacataccaaccgagtt 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggcctcacttcgagcggtattcaacgactatctcaaccgatatacataccaaccgagtt 60
Query: 66 gatatgttgtttgaatgccccttgaactcgaggccc 101
||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatatgttgtttgaatgccccttgaactcgaggccc 96
>RF00785;mir-90;ABEG01007218.1/6936-6838 135651:Caenorhabditis
brenneri
Length = 99
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 60 cgagttgatatgttgtttgaatgccccttga 90
|||||||||||||||||||||||||||||||
Sbjct: 58 cgagttgatatgttgtttgaatgccccttga 88
>RF00785;mir-90;ABLE02016063.1/2652-2746 281687:Caenorhabditis
japonica
Length = 95
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 63 gttgatatgttgtttgaatgccccttgaa 91
|||||||||||||||||||||||||||||
Sbjct: 57 gttgatatgttgtttgaatgccccttgaa 85
>RF00785;mir-90;Z22175.1/9773-9676 6239:Caenorhabditis elegans
Length = 98
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 63 gttgatatgttgtttgaatgccccttgaa 91
|||||||||||||||||||||||||||||
Sbjct: 60 gttgatatgttgtttgaatgccccttgaa 88
>RF00785;mir-90;CAAC02000525.1/201174-201268 6238:Caenorhabditis
briggsae
Length = 95
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 63 gttgatatgttgtttgaatgccccttga 90
||||||||||||||||||||||||||||
Sbjct: 57 gttgatatgttgtttgaatgccccttga 84
