miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00239;mir-124;ABEG01011177.1/3244-3158 135651:Caenorhabditis
brenneri
Length = 87
Score = 139 bits (70), Expect = 7e-33
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 14 tggcatacacctgagtgactttagtggacatctcaagtttccaactaaggcacgcggtga 73
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 tggcatacacctgagtgactttagtggacatctgaagtttccaactaaggcacgcggtga 70
Query: 74 atgccacgtggcaa 87
||||||||||||||
Sbjct: 71 atgccacgtggcaa 84
>RF00239;mir-124;CAAC02000470.1/381134-381048 6238:Caenorhabditis
briggsae
Length = 87
Score = 115 bits (58), Expect = 1e-25
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 21 cacctgagtgactttagtggacatctcaagtttccaactaaggcacgcggtgaatgccac 80
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 18 cacctgagtgactttagtggacatgtatagtttccaactaaggcacgcggtgaatgccac 77
Query: 81 gtggcaattc 90
||||||||||
Sbjct: 78 gtggcaattc 87
>RF00239;mir-124;Z72504.1/8327-8413 6239:Caenorhabditis elegans
Length = 87
Score = 89.7 bits (45), Expect = 6e-18
Identities = 68/73 (93%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 14 tggcatacacctgagtgactttagtggacatctcaagt-ttccaactaaggcacgcggtg 72
|||||| |||| |||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 11 tggcatgcaccctagtgactttagtggacatct-aagtcttccaactaaggcacgcggtg 69
Query: 73 aatgccacgtggc 85
|||||||||||||
Sbjct: 70 aatgccacgtggc 82
>RF00239;mir-124;ABLE02011614.1/2350-2264 281687:Caenorhabditis
japonica
Length = 87
Score = 85.7 bits (43), Expect = 9e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 21 cacctgagtgactttagtggacatctcaagtttccaactaaggcacgcggtgaatgccac 80
||||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct: 18 cacctgagtgactttagtggacaatttttggttccaactaaggcacgcggtgaatgccac 77
Query: 81 gtggcaa 87
|||||||
Sbjct: 78 gtggcaa 84
>RF00239;mir-124;ABKE01011138.1/1481-1398 54126:Pristionchus
pacificus
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aactaaggcacgcggtgaatgcca 79
||||||||||||||||||||||||
Sbjct: 50 aactaaggcacgcggtgaatgcca 73
>RF00239;mir-124;AAWT01074852.1/5580-5657 79327:Schmidtea
mediterranea
Length = 78
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 actaaggcacgcggtgaatgcca 79
|||||||||||||||||||||||
Sbjct: 44 actaaggcacgcggtgaatgcca 66
>RF00239;mir-124;ABLA01036893.1/860-781 51029:Heterodera glycines
Length = 80
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 actaaggcacgcggtgaatgcca 79
|||||||||||||||||||||||
Sbjct: 47 actaaggcacgcggtgaatgcca 69
