miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00843;mir-228;AAGD02004629.1/4581-4485 31234:Caenorhabditis
remanei
Length = 97
Score = 186 bits (94), Expect = 3e-47
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 atcctatcttgttcgcaatggcactgcatgaattcacggatgcattgcgacagaccgcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcctatcttgttcgcaatggcactgcatgaattcacggatgcattgcgacagaccgcgg 60
Query: 61 atcatgcggtaccatagcggacagtggtgagata 94
||||||||||||||||||||||||||||||||||
Sbjct: 61 atcatgcggtaccatagcggacagtggtgagata 94
>RF00843;mir-228;ABEG01005415.1/4927-5024 135651:Caenorhabditis
brenneri
Length = 98
Score = 137 bits (69), Expect = 3e-32
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 10 tgttcgcaatggcactgcatgaattcacggatgcattgcgacagaccgcggatcatgcgg 69
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 tgtttgcaatggcactgcatgaattcacggatgcattgcgacagaccgcggatcatgcgg 71
Query: 70 taccatagcggacagtg 86
||||||||| |||||||
Sbjct: 72 taccatagctgacagtg 88
>RF00843;mir-228;CAAC02000563.1/426449-426353 6238:Caenorhabditis
briggsae
Length = 97
Score = 135 bits (68), Expect = 1e-31
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 10 tgttcgcaatggcactgcatgaattcacggatgcattgcgacagaccgcggatcatgcgg 69
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 10 tgttcgcaatggcactgcatgaattcacggatgcaaagcgacagaccgcggatcatgcgg 69
Query: 70 taccatagcggacagtggtgagat 93
||||||||| ||| ||||||||||
Sbjct: 70 taccatagctgacggtggtgagat 93
>RF00843;mir-228;U61944.1/23963-24061 6239:Caenorhabditis elegans
Length = 99
Score = 103 bits (52), Expect = 4e-22
Identities = 76/83 (91%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 11 gttcgcaatggcactgcatgaattcacgg--atgcattgcgacagaccgcggatcatgcg 68
||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||
Sbjct: 11 gttcgcaatggcactgcatgaattcacggctatgcataacgacagaccgcggatcatacg 70
Query: 69 gtaccatagcggacagtggtgag 91
|||||||||||||| ||| ||||
Sbjct: 71 gtaccatagcggacggtgatgag 93
>RF00843;mir-228;ABLE02006396.1/4992-4890 281687:Caenorhabditis
japonica
Length = 103
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 cgcaatggcactgcatgaattcacgg 39
||||||||||||||||||||||||||
Sbjct: 11 cgcaatggcactgcatgaattcacgg 36
