miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00851;mir-230;AAGD02000028.1/339602-339506 31234:Caenorhabditis
remanei
Length = 97
Score = 186 bits (94), Expect = 3e-47
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 gatgttgtaccgatacttggtcgacaatctaatattatcggttctgccagaagatagtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gatgttgtaccgatacttggtcgacaatctaatattatcggttctgccagaagatagtat 62
Query: 61 tagttgtgcgaccaggagacggtatttaacatca 94
||||||||||||||||||||||||||||||||||
Sbjct: 63 tagttgtgcgaccaggagacggtatttaacatca 96
>RF00851;mir-230;U40412.1/21083-21180 6239:Caenorhabditis elegans
Length = 98
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 55 tagtattagttgtgcgaccaggagacggtatt 86
||||||||||||||||||||||||||||||||
Sbjct: 59 tagtattagttgtgcgaccaggagacggtatt 90
>RF00851;mir-230;ABLE02007980.1/14407-14312 281687:Caenorhabditis
japonica
Length = 96
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 55 tagtattagttgtgcgaccaggagacggta 84
||||||||||||||||||||||||||||||
Sbjct: 59 tagtattagttgtgcgaccaggagacggta 88
>RF00851;mir-230;ABEG01000044.1/3376-3470 135651:Caenorhabditis
brenneri
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 53 gatagtattagttgtgcgaccaggagacggt 83
|||||||||||||||| ||||||||||||||
Sbjct: 55 gatagtattagttgtgtgaccaggagacggt 85
>RF00851;mir-230;CAAC02000521.1/3562400-3562495
6238:Caenorhabditis briggsae
Length = 96
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 gatagtattagttgtgcgaccagga 77
|||||||||||||||||||||||||
Sbjct: 55 gatagtattagttgtgcgaccagga 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 taccgatacttggtcgacaatctaatattatc 39
||||||||||||||||||||| ||||| ||||
Sbjct: 10 taccgatacttggtcgacaatttaatagtatc 41
