miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00852;mir-231;CAAC02000486.1/217689-217765 6238:Caenorhabditis
briggsae
Length = 77
Score = 87.7 bits (44), Expect = 3e-17
Identities = 70/78 (89%), Gaps = 3/78 (3%)
Strand = Plus / Plus
Query: 15 atgttgttctgactgtttccatagcttatattgtctcaaaatgcatataagctcgtgaac 74
||||||||||| |||||||||||||||||||||| || | | |||||||||||||||
Sbjct: 3 atgttgttctgtctgtttccatagcttatattgt---aaggtacttataagctcgtgaac 59
Query: 75 aacaggcaggacaactgg 92
||||||||||||||||||
Sbjct: 60 aacaggcaggacaactgg 77
>RF00852;mir-231;FJ362359.1/41851-41768 135651:Caenorhabditis
brenneri
Length = 84
Score = 60.0 bits (30), Expect = 7e-09
Identities = 69/80 (86%), Gaps = 4/80 (5%)
Strand = Plus / Plus
Query: 15 atgttgttctgactgtttccatagcttatattgtc---tcaaa-atgcatataagctcgt 70
||||||||||||||||||| | |||||||||||| || || || | |||||||||||
Sbjct: 3 atgttgttctgactgtttcaaaagcttatattgttcattcgaagatacttataagctcgt 62
Query: 71 gaacaacaggcaggacaact 90
|| |||||||||||||||||
Sbjct: 63 gatcaacaggcaggacaact 82
>RF00852;mir-231;AC006679.2/6436-6354 6239:Caenorhabditis elegans
Length = 83
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 58 catataagctcgtgaacaacaggcaggacaact 90
||||||||||||||| |||||||||| ||||||
Sbjct: 49 catataagctcgtgatcaacaggcagaacaact 81
>RF00852;mir-231;ABLE02012124.1/4145-4219 281687:Caenorhabditis
japonica
Length = 75
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 60 tataagctcgtgaacaacaggcaggac 86
||||||||||||| |||||||||||||
Sbjct: 43 tataagctcgtgatcaacaggcaggac 69
