miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00856;mir-232;AAGD02002188.1/4948-5045 31234:Caenorhabditis
remanei
Length = 98
Score = 194 bits (98), Expect = 2e-49
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 13 aagtctgattgtcggatctccgtagtttcgatcattttatcctatctccaacaaagcgat 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagtctgattgtcggatctccgtagtttcgatcattttatcctatctccaacaaagcgat 60
Query: 73 aaatgcatcttaactgcggtgatctgaattcttggaca 110
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaatgcatcttaactgcggtgatctgaattcttggaca 98
>RF00856;mir-232;CAAC02000470.1/1099567-1099662
6238:Caenorhabditis briggsae
Length = 96
Score = 71.9 bits (36), Expect = 2e-12
Identities = 66/75 (88%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 24 tcggatctccgtagtttcgatcattttatcctatctccaacaaagcgataaatgcatctt 83
||||||||||||||||| || |||||||||| | || || || | ||||||||||||||
Sbjct: 12 tcggatctccgtagttttgaccattttatccaacct--aataatgtgataaatgcatctt 69
Query: 84 aactgcggtgatctg 98
|||||||||||||||
Sbjct: 70 aactgcggtgatctg 84
>RF00856;mir-232;ABLE02018558.1/14257-14154 281687:Caenorhabditis
japonica
Length = 104
Score = 65.9 bits (33), Expect = 1e-10
Identities = 79/90 (87%), Gaps = 7/90 (7%)
Strand = Plus / Plus
Query: 26 ggatctccgtagtttcgatcattttatcctatctccaacaaa----gcgataaatgcatc 81
|||||||||||||||||||| |||||||| | | ||| |||| ||||||||||||||
Sbjct: 17 ggatctccgtagtttcgatcgttttatcc-agcgcca-caaaccgtgcgataaatgcatc 74
Query: 82 ttaactgcggtgatctg-aattcttggaca 110
||||||||||||||||| |||||| |||||
Sbjct: 75 ttaactgcggtgatctgcaattctgggaca 104
>RF00856;mir-232;Z68748.1/3269-3172 6239:Caenorhabditis elegans
Length = 98
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 70 gataaatgcatcttaactgcggtgatct 97
||||||||||||||||||||||||||||
Sbjct: 59 gataaatgcatcttaactgcggtgatct 86
