miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00899;mir-235;AAGD02010739.1/10351-10420 31234:Caenorhabditis
remanei
Length = 70
Score = 139 bits (70), Expect = 8e-33
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 23 gatcaggccttggccgaatgcatatattgctcagttgaattgctaatattgcactcgccc 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatcaggccttggccgaatgcatatattgctcagttgaattgctaatattgcactcgccc 60
Query: 83 cggcctgatc 92
||||||||||
Sbjct: 61 cggcctgatc 70
>RF00899;mir-235;ABLE02018939.1/657-587 281687:Caenorhabditis
japonica
Length = 71
Score = 61.9 bits (31), Expect = 2e-09
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 23 gatcaggccttggccgaatgcatatattgc-tcagttgaattgctaatattgcactcgcc 81
||||||| |||||||| |||||||||||| || ||| |||||||||||||||||||
Sbjct: 1 gatcaggtcttggccggttgcatatattgcgtcgacagaaatgctaatattgcactcgcc 60
Query: 82 ccggcctgatc 92
|||||||||||
Sbjct: 61 ccggcctgatc 71
>RF00899;mir-235;ABEG01020915.1/1995-1922 135651:Caenorhabditis
brenneri
Length = 74
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 63 tgctaatattgcactcgccccggcctgatc 92
||||||||||||||||||||||||||||||
Sbjct: 45 tgctaatattgcactcgccccggcctgatc 74
>RF00899;mir-235;U97405.1/12723-12654 6239:Caenorhabditis elegans
Length = 70
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 67 aatattgcactcgccccggcctgatc 92
|||||||||||| |||||||||||||
Sbjct: 45 aatattgcactctccccggcctgatc 70
