miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00713;mir-239;AAGD02001685.1/9995-9897 31234:Caenorhabditis
remanei
Length = 99
Score = 184 bits (93), Expect = 1e-46
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 aatccaagattgcgatttttgtactacacataggtactggacactgagatttgtatccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatccaagattgcgatttttgtactacacataggtactggacactgagatttgtatccag 60
Query: 61 aatctattctagtgcaaaaattgctctggattc 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 aatctattctagtgcaaaaattgctctggattc 93
>RF00713;mir-239;Z67754.1/1218-1322 6239:Caenorhabditis elegans
Length = 105
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 10 ttgcgatttttgtactacacataggtactggaca 43
|||| |||||||||||||||||||||||||||||
Sbjct: 12 ttgcaatttttgtactacacataggtactggaca 45
>RF00713;mir-239;CAAC02000438.1/1164613-1164718
6238:Caenorhabditis briggsae
Length = 106
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 11 tgcgatttttgtactacacataggtactggacac 44
|||||||||||||||||| ||||||||||||||
Sbjct: 13 tgcgatttttgtactacaattaggtactggacac 46
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 52 tgtatccagaatctattctagtgcaaaaat 81
|||||||||||||||| ||||| |||||||
Sbjct: 57 tgtatccagaatctatactagtacaaaaat 86
>RF00713;mir-239;ABLE02014824.1/3073-3172 281687:Caenorhabditis
japonica
Length = 100
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 tttgtactacacataggtactgg 40
|||||||||||||||||||||||
Sbjct: 18 tttgtactacacataggtactgg 40
