miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00809;mir-241;AAGD02012077.1/6135-6233 31234:Caenorhabditis
remanei
Length = 99
Score = 196 bits (99), Expect = 5e-50
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 8 gcgacgtgtcaaagtagaggtaggtgcgagaaatgacggaacctcacaaatcatcgttca 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgacgtgtcaaagtagaggtaggtgcgagaaatgacggaacctcacaaatcatcgttca 60
Query: 68 ttgtctcgcagctgcttcaactgtgcccactgacgcaaa 106
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgtctcgcagctgcttcaactgtgcccactgacgcaaa 99
>RF00809;mir-241;ABEG01002557.1/11425-11329 135651:Caenorhabditis
brenneri
Length = 97
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 13 gtgtcaaagtagaggtaggtgcgagaaatgacgg 46
||||||||||||||||||||||||||||||||||
Sbjct: 6 gtgtcaaagtagaggtaggtgcgagaaatgacgg 39
>RF00809;mir-241;Z81551.1/7696-7601 6239:Caenorhabditis elegans
Length = 96
Score = 65.9 bits (33), Expect = 1e-10
Identities = 71/81 (87%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 13 gtgtcaaagtagaggtaggtgcgagaaatgacggaacctcaca-aatcatcgttcattgt 71
|||||||||| ||||||||||||||||||||||| | | || | | | ||||||||||||
Sbjct: 6 gtgtcaaagttgaggtaggtgcgagaaatgacggcatc-catatagtaatcgttcattgt 64
Query: 72 ctcgcagctgcttcaactgtg 92
||| ||||||||||| |||||
Sbjct: 65 ctctcagctgcttcatctgtg 85
>RF00809;mir-241;ABLE02005635.1/1359-1453 281687:Caenorhabditis
japonica
Length = 95
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 13 gtgtcaaagtagaggtaggtgcgagaaatgacg 45
|||||||||| ||||||||||||||||||||||
Sbjct: 6 gtgtcaaagttgaggtaggtgcgagaaatgacg 38
>RF00809;mir-241;CAAC02000462.1/386402-386495 6238:Caenorhabditis
briggsae
Length = 94
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 64 ttcattgtctcgcagctgcttcaactgtg 92
|||||||||||||||||||||||||||||
Sbjct: 55 ttcattgtctcgcagctgcttcaactgtg 83
