miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00815;mir-244;AAGD02001046.1/36887-36781 31234:Caenorhabditis
remanei
Length = 107
Score = 212 bits (107), Expect = 8e-55
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 12 tctccagtttctcgatctctttggttgtacaaagtggtatggcacttctcaatagtctgc 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctccagtttctcgatctctttggttgtacaaagtggtatggcacttctcaatagtctgc 60
Query: 72 tcataccgcttttcggctaaaggaatcgagtctttggtgtcattaat 118
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcataccgcttttcggctaaaggaatcgagtctttggtgtcattaat 107
>RF00815;mir-244;ABEG01020864.1/3553-3656 135651:Caenorhabditis
brenneri
Length = 104
Score = 75.8 bits (38), Expect = 1e-13
Identities = 73/82 (89%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 19 tttctcgatctctttggttgtacaaagtggtatggcacttctcaat-agtctgctcatac 77
||||||||||||||||||||||||||||||||||||| || ||| | | |||||||||
Sbjct: 7 tttctcgatctctttggttgtacaaagtggtatggcaatt-tcattaaaaatgctcatac 65
Query: 78 cgcttttcggctaaaggaatcg 99
|||||||| ||| |||||||||
Sbjct: 66 cgcttttcagctgaaggaatcg 87
>RF00815;mir-244;ABLE02005099.1/2723-2825 281687:Caenorhabditis
japonica
Length = 103
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 20 ttctcgatctctttggttgtacaaagtggtatg 52
|||||||||||||||||||||||||||||||||
Sbjct: 7 ttctcgatctctttggttgtacaaagtggtatg 39
>RF00815;mir-244;CAAC02000589.1/1456779-1456876
6238:Caenorhabditis briggsae
Length = 98
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 19 tttctcgatctctttggttgtacaaagtggtatggc 54
||||||||| ||||||||||||||||||||||||||
Sbjct: 8 tttctcgatttctttggttgtacaaagtggtatggc 43
>RF00815;mir-244;AF067617.1/15169-15068 6239:Caenorhabditis
elegans
Length = 102
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 21 tctcgatctctttggttgtacaaagtggtatggc 54
|||| |||||||||||||||||||||||||||||
Sbjct: 9 tctcaatctctttggttgtacaaagtggtatggc 42
