miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00816;mir-245;CAAC02000478.1/282161-282067 6238:Caenorhabditis
briggsae
Length = 95
Score = 133 bits (67), Expect = 5e-31
Identities = 83/87 (95%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 8 tcaatgtcgaagagctgcttgcaaggtacctaattgtttg-cacatttctcaattggtcc 66
|||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 7 tcaatgtcgaagagctgcttgcaaggtacctaattgtttgactctattctcaattggtcc 66
Query: 67 cctccaagtagctctattgcattgttt 93
|||||||||||||||||||||||||||
Sbjct: 67 cctccaagtagctctattgcattgttt 93
>RF00816;mir-245;ABEG01015644.1/323-418 135651:Caenorhabditis
brenneri
Length = 96
Score = 103 bits (52), Expect = 4e-22
Identities = 70/75 (93%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 19 gagctgcttgcaaggtacctaattgtttgcacat--ttctcaattggtcccctccaagta 76
||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 18 gagctgcttgcaaggtacctaattgtttgaaattcattctcaattggtcccctccaagta 77
Query: 77 gctctattgcattgt 91
|||||||||||||||
Sbjct: 78 gctctattgcattgt 92
>RF00816;mir-245;Z75542.1/9021-9117 6239:Caenorhabditis elegans
Length = 97
Score = 95.6 bits (48), Expect = 1e-19
Identities = 80/90 (88%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 8 tcaatgtcgaagagctgcttgcaaggtacctaattgtttgcacatt---tctcaattggt 64
||||||| | |||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct: 7 tcaatgttggagagctatttgcaaggtacctaattgtttgattattgattctcaattggt 66
Query: 65 cccctccaagtagctctattgcattgtttg 94
||||||||||||||||||||||||||||||
Sbjct: 67 cccctccaagtagctctattgcattgtttg 96
>RF00816;mir-245;ABLE02010834.1/2284-2190 281687:Caenorhabditis
japonica
Length = 95
Score = 69.9 bits (35), Expect = 6e-12
Identities = 66/74 (89%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 18 agagctgcttgcaaggtacctaattgtttgcacat--ttctcaattggtcccctccaagt 75
||||||| |||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 17 agagctgtttgcaaggtacctaattgtttg-aaatgattctcaattggtcccctccaagc 75
Query: 76 agctctattgcatt 89
||||| || |||||
Sbjct: 76 agctccatcgcatt 89
