miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00836;mir-250;AAGD02011065.1/159359-159279 31234:Caenorhabditis
remanei
Length = 81
Score = 161 bits (81), Expect = 3e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 19 tcggaccgccccttcagttgactcgtgatccgccgactttgatatatggacgaatcacag 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcggaccgccccttcagttgactcgtgatccgccgactttgatatatggacgaatcacag 60
Query: 79 tcacctgatggtacggtcttt 99
|||||||||||||||||||||
Sbjct: 61 tcacctgatggtacggtcttt 81
>RF00836;mir-250;CAAC02000606.1/999512-999434 6238:Caenorhabditis
briggsae
Length = 79
Score = 60.0 bits (30), Expect = 7e-09
Identities = 68/78 (87%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 19 tcggaccgccccttcagttgactcgtgatccgccgactttgatatatggacgaatcacag 78
||||||| | |||||||||| ||||||||||||||| | || || |||||||||||||||
Sbjct: 1 tcggaccacgccttcagttgcctcgtgatccgccgaatctg-ta-atggacgaatcacag 58
Query: 79 tcacctgatggtacggtc 96
||| ||| ||| ||||||
Sbjct: 59 tcaactgttggcacggtc 76
>RF00836;mir-250;Z72511.1/6583-6503 6239:Caenorhabditis elegans
Length = 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 19 tcggaccgccccttcagttgactcgtgatccgccgactttgatatatggacgaatcacag 78
||||||| | |||||||||| ||||||||||||| | ||| |||||||||||||||
Sbjct: 1 tcggaccacgccttcagttgcctcgtgatccgccaaacacaataaatggacgaatcacag 60
Query: 79 tca 81
|||
Sbjct: 61 tca 63
>RF00836;mir-250;ABEG01010693.1/18993-19071 135651:Caenorhabditis
brenneri
Length = 79
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 64 atggacgaatcacagtcacctgatggtacggtctt 98
|||||||||||||||||| ||| ||| ||||||||
Sbjct: 44 atggacgaatcacagtcaactgttggcacggtctt 78
