miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00838;mir-252;AAGD02000357.1/21908-22018 31234:Caenorhabditis
remanei
Length = 111
Score = 190 bits (96), Expect = 2e-48
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 ggtctctttcagttataagtagtagtgccgcaggtaaccactcaaatatatggtttacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ggtctctttcagttataagtagtagtgccgcaggtaaccactcaaatatatggtttacct 71
Query: 61 actgccttctgcttagaattgaaatatcgatgaccg 96
||||||||||||||||||||||||||||||||||||
Sbjct: 72 actgccttctgcttagaattgaaatatcgatgaccg 107
>RF00838;mir-252;ABEG01023523.1/4749-4856 135651:Caenorhabditis
brenneri
Length = 108
Score = 107 bits (54), Expect = 3e-23
Identities = 86/96 (89%), Gaps = 3/96 (3%)
Strand = Plus / Plus
Query: 1 ggtctctttcagttataagtagtagtgccgcaggtaaccactcaaatatatggtttacct 60
||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct: 12 ggtctctttcagttataagtagtagtgccgcaggtaacc---gatttcaatggtttacct 68
Query: 61 actgccttctgcttagaattgaaatatcgatgaccg 96
||||||| ||||||||||||||||| ||||||||||
Sbjct: 69 actgcctcctgcttagaattgaaatttcgatgaccg 104
>RF00838;mir-252;Z66521.1/2054-1944 6239:Caenorhabditis elegans
Length = 111
Score = 101 bits (51), Expect = 2e-21
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 1 ggtctctttcagttataagtagtagtgccgcaggtaaccactcaaatatatggtttacct 60
||||||||||||||||||||||||||||||||||||||| | || | || ||||||
Sbjct: 12 ggtctctttcagttataagtagtagtgccgcaggtaaccgccagtctaaaaggcttacct 71
Query: 61 actgccttctgcttagaattgaaatatcgatgacc 95
||||||||||||||| ||||||||||| |||||||
Sbjct: 72 actgccttctgcttaaaattgaaatattgatgacc 106
>RF00838;mir-252;CAAC02000450.1/1710699-1710587
6238:Caenorhabditis briggsae
Length = 113
Score = 87.7 bits (44), Expect = 2e-17
Identities = 74/83 (89%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 1 ggtctctttcagttataagtagtagtgccgcaggtaaccact--caaatatatggtttac 58
||||||| |||||||||||||||||||||||||||||| || || | | ||||||||
Sbjct: 12 ggtctctcccagttataagtagtagtgccgcaggtaaccgcttccagaaaattggtttac 71
Query: 59 ctactgccttctgcttagaattg 81
|||||||||||||||||||||||
Sbjct: 72 ctactgccttctgcttagaattg 94
>RF00838;mir-252;ABLE02011229.1/3010-3114 281687:Caenorhabditis
japonica
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 ttataagtagtagtgccgcaggtaac 38
||||||||||||||||||||||||||
Sbjct: 24 ttataagtagtagtgccgcaggtaac 49
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 55 ttacctactgccttctgcttagaattgaaatatcgatgac 94
||||||||||||| ||||||| ||||| ||| ||||||||
Sbjct: 60 ttacctactgcctcctgcttaaaattggaatttcgatgac 99
>RF00838;mir-252;ABKE01000496.1/4965-5072 54126:Pristionchus
pacificus
Length = 108
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 taagtagtagtgccgcaggtaacca 40
|||||||||||||||||||||||||
Sbjct: 26 taagtagtagtgccgcaggtaacca 50
>RF00838;mir-252;AAQA01000035.1/130050-130151 6279:Brugia malayi
Length = 102
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 taagtagtagtgccgcaggtaac 38
|||||||||||||||||||||||
Sbjct: 25 taagtagtagtgccgcaggtaac 47
>RF00838;mir-252;ABJB010205097.1/5176-5282 6945:Ixodes scapularis
(black-legged tick)
Length = 107
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 taagtagtagtgccgcaggtaa 37
||||||||||||||||||||||
Sbjct: 27 taagtagtagtgccgcaggtaa 48
